RNA id: TU258718


Basic Information

Item Value
RNA id TU258718
length 297
lncRNA type read_through
GC content 0.49
exon number 3
gene id G190674
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1322589 ~ 1367404 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgtgtgtgtgtctgtctgtctctgtgtgtgtgtgtgtatgtgtgtctgtctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtctctgtgtgtgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtctgtctctctgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtttgtgtctctgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258705 lncRNA upstream 33601 1272589 ~ 1288988 (+) True G190661
TU258715 lncRNA upstream 45891 1258447 ~ 1276698 (+) True G190671
TU258725 lncRNA upstream 52662 1257556 ~ 1269927 (+) True G190681
TU258741 lncRNA upstream 91384 1229622 ~ 1231205 (+) True G190694
TU258734 lncRNA upstream 233314 1083719 ~ 1089275 (+) True G190689
TU258707 lncRNA downstream 1118 1368522 ~ 1415492 (+) True G190663
TU258779 lncRNA downstream 7525 1374929 ~ 1375367 (+) True G190726
TU258713 lncRNA downstream 10084 1377488 ~ 1386647 (+) True G190669
TU258716 lncRNA downstream 17596 1385000 ~ 1419534 (+) True G190672
TU258712 lncRNA downstream 25984 1393388 ~ 1408170 (+) True G190668
XM_039784681.1 mRNA upstream 43004 1268100 ~ 1279585 (+) True LOC120548417
XM_039784680.1 mRNA upstream 52060 1261525 ~ 1270529 (+) False LOC120548416
XM_039784677.1 mRNA upstream 94380 1227292 ~ 1228209 (+) True LOC120548414
XM_039783037.1 mRNA upstream 135824 1181539 ~ 1186765 (+) True LOC120547564
XM_039784673.1 mRNA upstream 161679 1144409 ~ 1160910 (+) True LOC120548410
XM_039784491.1 mRNA downstream 95833 1463237 ~ 1469251 (+) True LOC120548322
XM_039783195.1 mRNA downstream 124581 1491985 ~ 1499227 (+) True LOC120547663
XM_039784294.1 mRNA downstream 262073 1629477 ~ 1669861 (+) True LOC120548209
XM_039784686.1 mRNA downstream 382500 1749904 ~ 1751977 (+) True LOC120548423
XM_039784012.1 mRNA downstream 481909 1849313 ~ 1855707 (+) True LOC120548061
TU258747 other upstream 35762 1286410 ~ 1286827 (+) True G190700
TU258691 other upstream 50683 1144425 ~ 1271906 (+) False LOC120548410
TU258701 other upstream 52176 1268136 ~ 1270413 (+) True G190658
TU258551 other upstream 56506 1262816 ~ 1266083 (+) True LOC120548416
TU258690 other upstream 171335 1144425 ~ 1151254 (+) False LOC120548410
TU258719 other downstream 36119 1403523 ~ 1567121 (+) True G190675
TU258797 other downstream 124602 1492006 ~ 1499112 (+) False LOC120547663
TU258792 other downstream 167893 1535297 ~ 1539838 (+) False G190735
TU258825 other downstream 175452 1542856 ~ 1543292 (+) True G190757
TU258826 other downstream 214430 1581834 ~ 1615546 (+) True G190758

Expression Profile