RNA id: TU258826


Basic Information

Item Value
RNA id TU258826
length 1950
RNA type TUCP
GC content 0.52
exon number 5
gene id G190758
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1581834 ~ 1615546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGTCGGCTGTTCAGCTGCAGGCGGTCGTGACGGTGGAGCAACCGGGcggccagcagggggcgctgctgCTGTGGGGGGGGGCCGTGGACTGGCTGCCTCGCTTCAACAGAgacagagCGGTGGTCTGGGACTTCCAGGTCCTCCTGGTGAGAGAGggtttgacctctgacctcccagAGCTGCACTCCACCCCCTGGAGCTCCATCCGGCCTCTGGACCCCGCTGACCGCCGGGCGCACAGCTTCCTCCGACCGGGACCGGGACCTGGACCACCAGGAACCAGGGGTAGCCTGGAGCTGGACGTGGACACGCTGCTGTCTCAGAAATACAGCGGTGACGTGGAGCTGAGAGTCCAGATCATCTCCTTCCAATTCCTCGTCTCTCTGccttcccagaatgcacctcAGCCGGTCCTGGACTGCTCCACGTCGCTGGACGGTACCCTGGCGGCGCTGAGCGGTGACATCACCTACACCGGCTGCGGCCGCTGCGCCGCCGAACTCGACACGGACGCCAACGGCATCTACGGCCCGTGTTACCCGTGCCTGCCCCGCACCGCCGTACGCCGCTACTACAGGCCAGGTGTGCTGACGGTGAGTGGGCGGAGCAGCAGGCAGGTGTTTGTTCAGGTTCCTCCTGATTCGCTGCAGAAGATCCTCGAAGCTCCGCCTGATAAACTCCACAGGAACTCAGCTCCAGGTTCGGAGGTGAAGCATGTCCAGCTGGCAGCTGAGCGGATCCAGACCCTCCTCTCCCTTCCGAGGAAAACCTTCACCATCACGGTCCGCAGCCACTTCCTGTGCGATGAAAACAGCGTCCCCATCGACCAGGACTTCACGCTGCTGGACCTCCAGTTCCCCCACTGATGCCCAGAACAGCTCCTCAGTGTGTTGGACCTTTGACCGTTCCCTAAACCCTTTCCCAAACACCAGAGCGTCCCAATCACAGTTTAgctttgcatttcttttttttaaattcagttcATCAGGGCGACGCATTGTCATGAACGGGTTCCTATAATATTGTACGATAAGTTATGCACACTGAAACGTGTATATCCTACCAAAACTAGGAGACCGCTGGACGGTCACGTGACATCGACTACAGAGATCCATGACGTTGAGCGCcagttgctagctgtttaagccgctacagagctgtGTGTGACTTTTAGGCTTTTACAGTTGCATGGAGGCTACGttctctttgtttgaaaagGGTGCTCAGGCCACATCTGGGACTTGGTTTCCTTTGTCTTAGAGGTCACATGCTCTGAGATCTTTGTTTAAAGGATAGAGTTTAACCACACTGTTCAGTTCCCAACATGGATTTAAGCTTTTAAATCCGGTATGCTAGTCGaaaatggaaacaaaacaaTACTGTAGCCGGCTTGCTGGCTGTAGCTGAATGACGAGAACACGGTGGATGAAGTTTAACCAGCGAACTGGGTTTTATGACCCTAGAATGTTTCAGAGCAACGAGAGCTGCCAGTGTTTCAGCAGAGATtatggttaagtttagacaagaaaaagtgagcgttatgCTGCGATGAAAGTTACGTTTAGGAAAAACTCAGAATCTCACATTtcccgggtgaaagtcttttgttttccccggGAAGTGAACGCTGCTCCCTGGCTTTAAAGTCCTGTGTGTTAACGCCcacacccccccaaccccctcccTCGACATTATTATACAGCAGCTGTCAATTCGGTGCTTATAACTTAtccctgtgtgtttcatatcaaaatctTCAGataaactcagctttctgtacaGTGACGCCCAAATGTTTTCTAAAGCAATGTGTGAAGAGATAATTTTGTGCTGAAGCTGAAACTTTGATGTTTGCttttttgaaattcctcaaatctcttttgaaaacaaaccttaacttaTGATGTGTTTTACGAATTGTTTCGgggcttgaaatgagtttactgTAGT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258706 lncRNA upstream 18734 1506179 ~ 1563100 (+) True G190662
TU258788 lncRNA upstream 41996 1535297 ~ 1539838 (+) True G190735
TU258724 lncRNA upstream 53901 1523220 ~ 1527933 (+) True G190680
TU258722 lncRNA upstream 61503 1483750 ~ 1520331 (+) True G190678
TU258799 lncRNA upstream 82325 1489399 ~ 1499509 (+) True G190738
TU258834 lncRNA downstream 66945 1682491 ~ 1690886 (+) True G190765
TU258854 lncRNA downstream 80192 1695738 ~ 1698673 (+) True G190784
TU258864 lncRNA downstream 86010 1701556 ~ 1779982 (+) False G190785
TU258867 lncRNA downstream 88555 1704101 ~ 1714843 (+) True G190785
TU258859 lncRNA downstream 97609 1713155 ~ 1748166 (+) False G190785
XM_039783195.1 mRNA upstream 82607 1491985 ~ 1499227 (+) True LOC120547663
XM_039784491.1 mRNA upstream 112583 1463237 ~ 1469251 (+) True LOC120548322
XM_039783917.1 mRNA upstream 229503 1349395 ~ 1352331 (+) True LOC120548015
XM_039784322.1 mRNA upstream 246890 1333473 ~ 1334944 (+) True LOC120548224
XM_039784681.1 mRNA upstream 302249 1268100 ~ 1279585 (+) True LOC120548417
XM_039784294.1 mRNA downstream 13931 1629477 ~ 1669861 (+) True LOC120548209
XM_039784686.1 mRNA downstream 134358 1749904 ~ 1751977 (+) True LOC120548423
XM_039784012.1 mRNA downstream 233767 1849313 ~ 1855707 (+) True LOC120548061
XM_039784691.1 mRNA downstream 262872 1878418 ~ 1882048 (+) True LOC120548429
XM_039784692.1 mRNA downstream 270405 1885951 ~ 1925546 (+) True LOC120548430
TU258719 other upstream 14713 1403523 ~ 1567121 (+) True G190675
TU258825 other upstream 38542 1542856 ~ 1543292 (+) True G190757
TU258792 other upstream 41996 1535297 ~ 1539838 (+) False G190735
TU258797 other upstream 82722 1492006 ~ 1499112 (+) False LOC120547663
TU258760 other upstream 229236 1349438 ~ 1352598 (+) False G190713
TU258856 other downstream 97609 1713155 ~ 1720117 (+) False G190785
TU259572 other downstream 332844 1948390 ~ 1949234 (+) True G191212
unassigned_transcript_1093 other downstream 345346 1960892 ~ 1960965 (+) True trnat-cgu_3
unassigned_transcript_1096 other downstream 348480 1964026 ~ 1964099 (+) True trnat-agu_10
TU259623 other downstream 387266 2002812 ~ 2004228 (+) True G191230

Expression Profile