RNA id: XM_039784686.1


Basic Information

Item Value
RNA id XM_039784686.1
length 1261
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC120548423
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1749904 ~ 1751977 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACACCAACTACACAACCACCAACCTTCCCACCTTTAACCCTCATACCTATTGGCATCGACCCCGTAAGCGTTCTATCTGGCATCGGCCCCCCAAACTCTGATATTGACAACAACATATTTACCTCAGGCTCCAGTAatctcaccaacaacaccttcGGCTCCAGTAATTACACCATCAGCACCTTCAACTACTACTACGATAACACTAAAGCTGGATTCATCTCAGATGTAGTGACGTACATCATCATTTGCATCGGCCTTCCTTTGACCCTCATCGCAATCTACTCTCTCTACTCTCTGGTACGAAATGATCACGTTGCTCCCATCTACGTCATCAACCTTCTGATTTCTGACCTCATCCAGTTCTGCTGCATGATCTGTGACGTGGCACAACCTAAGAACAGGATGATAAACATTATCTACGCAAGTATTTACAACTACAGTCTGTTGACCAGCGTCGGCTTCATGGTGTGCATCGCCCTGGAAAGGTATTTGCTGATCGTCTTCCCACTGTGGTACCGCTGCAGACGAACCATCAAGTCCACTGTGGTGATCTGTGTCGTGGCCTGGGCCCTTCCTTCTCTCTACCTTTTCACTGTATTTTTCGGTGGTAATTTTAACATAGCACAAATCATCGCCATTGTCTTTCTGCTCCTTCCCTTCCCACTGCTCATATTCTTCTGCTGTGCGACTCTCAGAGTCCTGTCTGCCTCCGTCTCGATCCTGCCTGAGGAAAAACGACGAATTGTAGGAACTTTGGTCCTGATGCTGCTAATTTACATGCTGCTTTTCCTGCCCAACATCATTTTGATAATGGCTAGCTACACAAAAGACAAATCACTAACTAATACTCTCTTCTACCTGGTTACTGATTTTTATAAGCTGAATACTCTTGCAGACTTGGTTCTGTATATTTTCATGAAGAAAGGGGCTCTAGACAAGATTTTGgcctctgtgtgttgttgcagAGTGAATGATGTCATCAGTCTGGAAAGACTGGAAAACAACACTAACGGTGTGAACTAGAAAAGTGGACtcaggctacatccacactgcttcattttgtttttaagcaGCATTTGGAGACAAAAACTATCTCCATGCACACAATAGTTTTATatccagtagcagaactaatctccgtgcATATTATCACGTCTGACTCATCAACGCTAACCCATGCTAAGATATACtaatatataagatatataagtTACTTTACTTTCATGAAGGTTACCACGTGACGTAGAACATGACGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258859 lncRNA upstream 1738 1713155 ~ 1748166 (+) False G190785
TU258862 lncRNA upstream 1738 1713155 ~ 1748166 (+) False G190785
TU258861 lncRNA upstream 31901 1713155 ~ 1718003 (+) False G190785
TU258867 lncRNA upstream 35061 1704101 ~ 1714843 (+) True G190785
TU258854 lncRNA upstream 51231 1695738 ~ 1698673 (+) True G190784
TU258870 lncRNA downstream 33504 1785481 ~ 1793572 (+) True G190786
XR_005637163.1 lncRNA downstream 62450 1814427 ~ 1815760 (+) True LOC120548281
XR_005637147.1 lncRNA downstream 64107 1816084 ~ 1817142 (+) True LOC120548173
TU259566 lncRNA downstream 147784 1899761 ~ 1921857 (+) True G191206
TU259564 lncRNA downstream 157655 1909632 ~ 1913931 (+) True G191205
XM_039784294.1 mRNA upstream 80043 1629477 ~ 1669861 (+) True LOC120548209
XM_039783195.1 mRNA upstream 250677 1491985 ~ 1499227 (+) True LOC120547663
XM_039784491.1 mRNA upstream 280653 1463237 ~ 1469251 (+) True LOC120548322
XM_039783917.1 mRNA upstream 397573 1349395 ~ 1352331 (+) True LOC120548015
XM_039784322.1 mRNA upstream 414960 1333473 ~ 1334944 (+) True LOC120548224
XM_039784012.1 mRNA downstream 97336 1849313 ~ 1855707 (+) True LOC120548061
XM_039784691.1 mRNA downstream 126441 1878418 ~ 1882048 (+) True LOC120548429
XM_039784692.1 mRNA downstream 133974 1885951 ~ 1925546 (+) True LOC120548430
XM_039783064.1 mRNA downstream 220205 1972182 ~ 1990814 (+) True LOC120547583
XM_039783716.1 mRNA downstream 254167 2006144 ~ 2111871 (+) True LOC120547899
TU258856 other upstream 29787 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 134358 1581834 ~ 1615546 (+) True G190758
TU258719 other upstream 182783 1403523 ~ 1567121 (+) True G190675
TU259572 other downstream 196413 1948390 ~ 1949234 (+) True G191212
unassigned_transcript_1093 other downstream 208915 1960892 ~ 1960965 (+) True trnat-cgu_3
unassigned_transcript_1096 other downstream 212049 1964026 ~ 1964099 (+) True trnat-agu_10
TU259623 other downstream 250835 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 293769 2045746 ~ 2045819 (+) True trnat-ugu_6

Expression Profile