RNA id: TU258870


Basic Information

Item Value
RNA id TU258870
length 371
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G190786
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1785481 ~ 1793572 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGACAATAAAATGGatcgattgattgattgactgactgtTTTTTTGGAGGGGTCATCTCTTACCGTGCTGACGAATCCGCTCGCTAACGCCGCGTTCTCCACCCCCTCCACCGCCGCCTGGGCCACCTCGTTGACCCCCTCCTTGGTCTTGGCGGCGGCCTCGCCCACGCCGGCCTTGGTCTTCTCGGCTGCGGCTACCACTCCATCCTTCGCCATGGAGAATCCCTTCTTGAAAGCGTCCATAATGCTTtgcttctctctctatcttatTCTCTCTTCTTATTCAGTGTTTTTCTCTCTCGTGTTTCCCTCTTTCTTCTGCTCCGTCTGCCTCGGCTGTCTCGTCTCTTCTCGTCTGTGCAGTGATCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258864 lncRNA upstream 5499 1701556 ~ 1779982 (+) False G190785
TU258865 lncRNA upstream 5499 1719943 ~ 1779982 (+) False G190785
TU258869 lncRNA upstream 5499 1725483 ~ 1779982 (+) False G190785
TU258859 lncRNA upstream 37315 1713155 ~ 1748166 (+) False G190785
TU258862 lncRNA upstream 37315 1713155 ~ 1748166 (+) False G190785
XR_005637163.1 lncRNA downstream 20855 1814427 ~ 1815760 (+) True LOC120548281
XR_005637147.1 lncRNA downstream 22512 1816084 ~ 1817142 (+) True LOC120548173
TU259566 lncRNA downstream 106189 1899761 ~ 1921857 (+) True G191206
TU259564 lncRNA downstream 116060 1909632 ~ 1913931 (+) True G191205
TU259569 lncRNA downstream 137711 1931283 ~ 1931851 (+) True G191209
XM_039784686.1 mRNA upstream 33504 1749904 ~ 1751977 (+) True LOC120548423
XM_039784294.1 mRNA upstream 115620 1629477 ~ 1669861 (+) True LOC120548209
XM_039783195.1 mRNA upstream 286254 1491985 ~ 1499227 (+) True LOC120547663
XM_039784491.1 mRNA upstream 316230 1463237 ~ 1469251 (+) True LOC120548322
XM_039783917.1 mRNA upstream 433150 1349395 ~ 1352331 (+) True LOC120548015
XM_039784012.1 mRNA downstream 55741 1849313 ~ 1855707 (+) True LOC120548061
XM_039784691.1 mRNA downstream 84846 1878418 ~ 1882048 (+) True LOC120548429
XM_039784692.1 mRNA downstream 92379 1885951 ~ 1925546 (+) True LOC120548430
XM_039783064.1 mRNA downstream 178610 1972182 ~ 1990814 (+) True LOC120547583
XM_039783716.1 mRNA downstream 212572 2006144 ~ 2111871 (+) True LOC120547899
TU258856 other upstream 65364 1713155 ~ 1720117 (+) False G190785
TU258826 other upstream 169935 1581834 ~ 1615546 (+) True G190758
TU258825 other upstream 242189 1542856 ~ 1543292 (+) True G190757
TU258792 other upstream 245643 1535297 ~ 1539838 (+) False G190735
TU258797 other upstream 286369 1492006 ~ 1499112 (+) False LOC120547663
TU259572 other downstream 154818 1948390 ~ 1949234 (+) True G191212
unassigned_transcript_1093 other downstream 167320 1960892 ~ 1960965 (+) True trnat-cgu_3
unassigned_transcript_1096 other downstream 170454 1964026 ~ 1964099 (+) True trnat-agu_10
TU259623 other downstream 209240 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1097 other downstream 252174 2045746 ~ 2045819 (+) True trnat-ugu_6

Expression Profile