RNA id: TU258551


Basic Information

Item Value
RNA id TU258551
length 2104
RNA type TUCP
GC content 0.42
exon number 2
gene id LOC120548416
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 1261525 ~ 1270529 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cttgtatttagtctctgtgttgtctttgtcttgtGTCAGATCATTGAACTGTTTAGGctGCTCTCAGAGACAAAATGGCTTCCATGGCAGAGGAGGATTTCTGCTGTTCAGTCTGTTGTGAAGTCTTTAGAGATCCTGTTATTCTGTCgccacagcttctgtaaagACCTGGTGGAGAAACAGGCACAGGAGTGTCCTGTTTGTAGGAAAAGATCAGACAGGCCAGAACCACCTCGTAACCTGGACTTAAAGAAGCTGTGTGAGAGGTTCGTACagcagagagatcagagagcttCAGAGGCTCTCAGATTCAGACCCATCGATGAAGCTGCACGACAACACAAGAAGGAAATTCAGGAAGCTCTGGAGCCCTTAAAGGAGAAGTTAAAGGTTTTTGAACGAGTTAAAGTGAAGTTTGATGAAACGGCAAAACACCTGAAGGTCCAGGCCCGACGCACAGAGACGCAGATTAAGGATCAGTTTAAGAAGCTTCACCGGTttctagaagaggaagaggaggccaggatggctgcactgagggaggaagaggagcagaagagtcagaggatgaaggagaagatggaggctctgagcagagagatagcagctctttcagacacagtcagagcccacagaggagcagctgagagctgaagacgtctcattcctgatcaactacaaggctgcagtggaaagagtccagcagagccccctgctggaggatccacagctgctctcaggagctctgatagacgaggccaaacacctgggcaacatgagcttcaacatctggaacaagatgaaggacatggtctcctacactcctctggttctggacccaaacactgctcATCCAGAACTCATCCTGTCTGAAGATCTGACCAGTGGGAGACTAGGAGAGGAACAGCAGCTTCCTGATAATCCAGAGAGGATTGATTATCACTGGTCTgtcctgggctctgagggctttAACTCACAGCTGGGATGTCGAGGTTGGAGACAGTACACACTGGATACtgggtgtgttagcagagtctgTCCAGAGGAAGGAAGACATAAAGTCTGAATTATGGGGAACAGGGTTCAGTGAAGGTAAATACTCAGCAGTGTCTCCACCAGCTCCAGATATTGATCTCCCATTTGAGAAGCAGCTCCAGAGGATcagagtgactctggactggaacagaggaaagctgtcgttctctgatcctgatactgacacacacatacacaccttcacacacactttcactgagaagATGTTTCCATTCATTAACACTGGGAATGAAATCCCACTGAAGATATCACCACTGAAGGTCTGTGTAACACAACAACAGGTCTGATGTCAGATCTCCAAAGTTAAGCCAAGAAACTACCAACTGGATAGAAACATTGCATTGTACATGTCCATCTGTAGCGGAGTAGAattagaaagtggcatgaaaagaaaagactcaagtaaattacaagtacctcaacatttggacttaagttcAGTTCTGGAGTAGATGTACTTAATTACATTCCTGGTGTCCTCGAGTGAAATTTGACCCATATTCAAaacgtttctatatcagaaattttgatttctttcaaccaaattgtcaaaaaataacCTGGAAGGTTCCAtacaaccattactcttcaGAAGTCAAATAAAAGATAGCTCAGTACTTTCATTGAATATataatttgggtgttttattcaattttataacatttggagagaaaaaatgataaaagaacattgaaaagaGTGACCAATGTCGGAAATGGCTTCAAAAATGTGAggaaaaaagaattaaaatgtgacaaaaacttcggtaagaagtgacaaaaaaaacatataaaaaactTTGGGGAAAAGCAACAGAAGTGTCAAAAAACACGACAACACCGTTGAAAAGAAAGTATATTTTgatcccaaaaaataaaaagttgcaCAGTCGACAGATCGAAAGGGTTAAGTTTGTATAAATGTAACTTTTTCTATGTGAATGATGCAAAGTCACAAATTATTTTTGCtgtatgcatacacacatacatgtgttGCCtttactatttaaaaaaataaaaaataaaaaaataaagtttatcaAAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU258741 lncRNA upstream 31611 1229622 ~ 1231205 (+) True G190694
TU258727 lncRNA upstream 112065 1075446 ~ 1150751 (+) True G190683
TU258733 lncRNA upstream 128272 1077816 ~ 1134544 (+) True G190688
TU258732 lncRNA upstream 130393 1077322 ~ 1132423 (+) False G190687
TU258734 lncRNA upstream 173541 1083719 ~ 1089275 (+) True G190689
TU258705 lncRNA downstream 6506 1272589 ~ 1288988 (+) True G190661
TU258748 lncRNA downstream 32023 1298106 ~ 1387685 (+) True G190701
TU258718 lncRNA downstream 56506 1322589 ~ 1367404 (+) True G190674
TU258769 lncRNA downstream 76047 1342130 ~ 1348027 (+) True G190718
TU258761 lncRNA downstream 82947 1349030 ~ 1352598 (+) False G190713
XM_039784677.1 mRNA upstream 34607 1227292 ~ 1228209 (+) True LOC120548414
XM_039783037.1 mRNA upstream 76051 1181539 ~ 1186765 (+) True LOC120547564
XM_039784673.1 mRNA upstream 101906 1144409 ~ 1160910 (+) True LOC120548410
XM_039783161.1 mRNA upstream 124332 1123693 ~ 1138484 (+) True LOC120547639
XM_039784672.1 mRNA upstream 140354 1071346 ~ 1122462 (+) True LOC120548409
XM_039784681.1 mRNA downstream 2017 1268100 ~ 1279585 (+) True LOC120548417
XM_039784322.1 mRNA downstream 67390 1333473 ~ 1334944 (+) True LOC120548224
XM_039783917.1 mRNA downstream 83312 1349395 ~ 1352331 (+) True LOC120548015
XM_039784491.1 mRNA downstream 197154 1463237 ~ 1469251 (+) True LOC120548322
XM_039783195.1 mRNA downstream 225902 1491985 ~ 1499227 (+) True LOC120547663
TU258684 other upstream 89398 1144425 ~ 1173418 (+) False LOC120548410
TU258685 other upstream 89398 1144425 ~ 1173418 (+) False LOC120548410
TU258683 other upstream 111562 1144425 ~ 1151254 (+) False LOC120548410
TU258688 other upstream 111562 1144425 ~ 1151254 (+) False LOC120548410
TU258690 other upstream 111562 1144425 ~ 1151254 (+) False LOC120548410
TU258701 other downstream 2053 1268136 ~ 1270413 (+) True G190658
TU258747 other downstream 20327 1286410 ~ 1286827 (+) True G190700
TU258760 other downstream 83355 1349438 ~ 1352598 (+) False G190713
TU258719 other downstream 137440 1403523 ~ 1567121 (+) True G190675
TU258797 other downstream 225923 1492006 ~ 1499112 (+) False LOC120547663

Expression Profile