RNA id: TU259628


Basic Information

Item Value
RNA id TU259628
length 1181
lncRNA type intronic
GC content 0.33
exon number 3
gene id G191233
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2021693 ~ 2034056 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAACTCTGGAGGACTGACCGGTTTATTGAGATGCAGGATGTGACTAGTTTAGCTTTGAGACTTTTACAGGATACATTGGAAGGTTTCTGAGCACATTACACCACTCAcacattatttattcatgtcTTTGTTTCTACTCGGTTGGACACTTTTAaacaggaaaacaacaaaatcctAAAATGCACATTAGCTTAGCAAGAGAGAAAATCAATCAACTGTTTAATGTACAAAATGTCAAGAAAATTGTCCATCACATGTCAcagagcccaagatgacgtctttAACTGTCTTGTTCGACCAACAGTCTAAAACccccaaaatattcagtttataataatatgaaacagagaaaaagcaggaaatcatcacaatCATCACAGCATTATTACTTTAAAAACGACCAAAACTATCAATGGATTATCAGAATAGTTGTGTGACGATCGGTTATTAAAGTAAACTAATACaaaaataagtgaaaaaaatattttagtaaactgaaactcaataaaaactaaaaccttcaagaaaaaagtaaaacttaaagctacattgtgtaagaatttctcccatctaacggtgaaattgtatatgacaatcAACTAactattactttctagcccctcctaTTCCGATTgcgttttaactcctacggtggccaaaCCCAAAATTAGCTCTGACTATCTCctgcagctgttctagccactccaatattaactttggtcttgttgcctTGCCTTTCaactcgctcgtatgtattctgaatgattctgaatgtcagattctacgcttacgagaatattttgattagttggtggaagtaattacacgtaaatgagcacatatttgtgaaagaacaaagttttttttgctaagaatcaactcaaaaaattacacaatgtaggtttaagtgAAACTATATCGCCTGGTTAAAAACTTATATATAAATGaatgcatgtttaaaaaaacaaacaatatttaaATCCCACGATTGAAAATCAAATGCCTACCCATCGAATGAATATTGAATATTCGATCCAGCCCTACACCAAGGTTTAAAGTAGTTGAAAGTCTCTTATTTTGAAGGCCAAATAacagctgtttgtttattccCTGATGCTGATAGAAAAGTatgataaaagaaaagatatttGGCAGTTTTAATCTCTGTGtaattgttttt

Function

GO: NA

KEGG:

id description
ko04062 Chemokine signaling pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259595 lncRNA upstream 21649 1999191 ~ 2000044 (+) True G191214
TU259621 lncRNA upstream 35943 1985439 ~ 1985750 (+) True G191229
TU259618 lncRNA upstream 38098 1972658 ~ 1983595 (+) True G191227
TU259616 lncRNA upstream 38098 1972950 ~ 1983595 (+) False G191227
TU259617 lncRNA upstream 38098 1973872 ~ 1983595 (+) False G191227
TU259603 lncRNA downstream 56059 2090115 ~ 2153393 (+) True G191218
TU259589 lncRNA downstream 67652 2101708 ~ 2117071 (+) False G191213
TU259582 lncRNA downstream 76422 2110478 ~ 2117071 (+) True G191213
TU259586 lncRNA downstream 76422 2110478 ~ 2117071 (+) False G191213
TU259636 lncRNA downstream 91146 2125202 ~ 2152936 (+) True G191240
XM_039783064.1 mRNA upstream 30879 1972182 ~ 1990814 (+) True LOC120547583
XM_039784692.1 mRNA upstream 96147 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 139645 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 165986 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 269716 1749904 ~ 1751977 (+) True LOC120548423
XM_039784136.1 mRNA downstream 159244 2193300 ~ 2200457 (+) True LOC120548117
XM_039784446.1 mRNA downstream 470711 2504767 ~ 2508381 (+) True rps27a
XM_039784693.1 mRNA downstream 495124 2529180 ~ 2637276 (+) True LOC120548433
XM_039784452.1 mRNA downstream 623801 2657857 ~ 2663678 (+) True LOC120548306
XM_039784458.1 mRNA downstream 795003 2829059 ~ 2829748 (+) True LOC120548310
TU259623 other upstream 17465 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1096 other upstream 57594 1964026 ~ 1964099 (+) True trnat-agu_10
unassigned_transcript_1093 other upstream 60728 1960892 ~ 1960965 (+) True trnat-cgu_3
TU259572 other upstream 72459 1948390 ~ 1949234 (+) True G191212
TU258856 other upstream 301576 1713155 ~ 1720117 (+) False G190785
unassigned_transcript_1097 other downstream 11690 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259632 other downstream 13901 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other downstream 18871 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1104 other downstream 84691 2118747 ~ 2118820 (+) True trnat-agu_14
unassigned_transcript_1105 other downstream 87336 2121392 ~ 2121465 (+) True trnat-agu_15

Expression Profile