RNA id: TU259582


Basic Information

Item Value
RNA id TU259582
length 2941
lncRNA type sense_over
GC content 0.41
exon number 3
gene id G191213
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2101708 ~ 2117071 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgtgaaataactgaaaacatgtcttatattttagattcttcaaagtagccaccctttgctttttctgataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttaccttcacaggtgtgctttgtcagggttcattagtggaagtttttccctttgctttttttgataactctgcaaacccttggtgttctctcaatgagcttcatgaggtagtcacctgaaatggttttaccttcacaggtgtgctttgtcagggttcattagtggaagtttttcccttattaataaaaaaagcaaagggtggctactttaaaatgcattgaatgagaaagtgtgtccaaacttttggcctgtacggTACTTTGCATTATATTTTTGGTATATTTTGAAtagtcatctgtgtttttctccttcacatataggctaaataaaggtatttccaccgtaaattggtgcataaaagtgtgtcagaatacaggaaatgaagtcgttgatgctcaaaactttcctgggggaggacacccagaccccccaacTATCATATGCTCCCTCCAAAAGGCccattctggcccatatatacagtataggcccatacatatacaggacagtatacccactacaatacgtTAGACTACACCATTGGGTTCGGATTAAAATGCTCCCAGGACATGAactcctgtttcctgggtgaaagtcttgtgttttctccttaacttcttccaggatataaacacctgtttcctgggtgaaagtcttgtgttttctccttaacttcttcaggacatgaacacctgtttcctgggtgaaagtcttgtgttttctccttaacttcttcaggacatgaacacctgtttcctgggtgaaagtcttgtgttttctccttaacttcttccaggacatgaacacctgtttcctgggtgaaagtcttgtgttttactccttaacttcttcaggacatgaacacctgtttcctgggtgatagtcttgtgttttttcttaacttcttccaggacatgaacacctgtttcctgggtgacagttttgagttttctccttaacttcttccaggatatgaacacctgtttcctgggtgacagtcttgtgttttctccttaactttgCGTGCACGTCGAATAAAGCAACTTCAAAAACCTGCataaaagtgtaaaaagaacacaccaagAAAGCCACCAAAACAGCATcaaaaacattagaaaaaaagaatataaagcATCGAAGAATACAttcaaaaagtgatgaaaaaaggtCATCAAACAGCATCAAAAAAGCATCTAAAGCATAGAAAAAAAGTGCCAGAAAATCGTCAAAAAATAGCATAGGTAAAAGCGTctaaagcttaaaaaaaaaacaccaaaaaacaaCTAGTGGGCGCTAacttatgaaacgctcctgtgggtcgaaTTAGACGATCAAACACAAGGTCTCGTCGTACGGTTTGGAGGACTTTTTCGGTAGTTATTCTTCGTTTACAGCAAACAGGATAAATGAAAACATCCTGACCACTTCTCCGTGGTGTTTTTAACAGTGTGAACGGAGCCTCGCTGTCGGTACGCGATCTGTGCTGCCTGCCTGACATGCACCATGCACATACGCAAGATGTTCGCGCTTACGCAGATGATAATCCTGTTTACgtcactgcacgatctgttcctcGTTTGCGCACCTTTGCACCGCGGgaatttcattcatttcattcatttcacaGCGCTCGCAGAGGGGAGTGTGGAGGAAACTGAAGCCTTGCAGTGACAGAAAGTGACTCAGACTAGTGATAGACCGATtttatcggccggccgatataTGGGGCCCATATTTGCGTTTTTACGTGTATCGGCATCAGTTGCTGCATTCGCCGATAGCTTTTTCCCGGtattatttacagacaggcaTCCACAGGCCAAAACCTGGctaaaacacactgtaaacaggccttcatatgtagcggaaaaaacacccaatctggtaACACCAGCAGCGTCTCACCGCCGCATGGGTCATCAGAACAGAAAGCGGCGTGGAGGCTTCGTACgatcatttaaaccagttttatgacgaggaaaaatctgacatttctgggcaaactttgcccaccggctttcaaaaagaaaatccgcacttcgGTCCCATCCACAGCAGACCTGGAACGGCACGCTGAACTGAAGCAACATATGGAGAAAAAACTCTGAActaagttcatttttggaactgtgaacttagttcaaaatgttgaagtatgaactatgaactgaacttagttcattttaaaatttgtgaactgaactttgaactagttcatgtagaaagtgaactttacCCAACACTGCGTATTTATGCGCATGCACGTATTTATGCGCATATCGGCTAGGAGGCAGCACAGATCGCGTAcccacactcacatacactgaTTACATGATTAAGAGCAGAAGGACTGTTTGGTTTAGGAACTCTGTGTCTTTTGGCTGAAGTTAAAAATGACTTTTGACACAAGTTCCAGCGGGGGAAACATTACAAATTCAGACTCTTTGCAGCGTTTTGTGCCTTAGAAAACGCTCTGTGATTCGTCTGTCTGACCGCGTGCCGGTGTACAGTTTATACTTTGAATATTTTATACAGTTTGGGTATTTTTTTCAGAGGGTGAACGTGTGTCACGGTTTGTCCCAGCATGTGGAACGAGGCAGGTTTGAACtggttggttttttttgtgtcgATGAGTTGAAAGTGAAACTGTATTAATGTCACATTTCGAAGGATGGAAAGAAGCTGAAGTAACTTTAAAACTCTCCTGGTTGTTGGAGCTTCAGCTGCTTCaaacatttgtttaaaaggtttttaaGTATTTGATGAATATCTGTGTTGCAAGCTGAATAAACTGAGCGCTTCAAACACTTGAAA

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0022900 electron transport chain biological_process

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259628 lncRNA upstream 76422 2021693 ~ 2034056 (+) True G191233
TU259595 lncRNA upstream 110434 1999191 ~ 2000044 (+) True G191214
TU259621 lncRNA upstream 124728 1985439 ~ 1985750 (+) True G191229
TU259616 lncRNA upstream 126883 1972950 ~ 1983595 (+) False G191227
TU259636 lncRNA downstream 8131 2125202 ~ 2152936 (+) True G191240
TU259638 lncRNA downstream 21811 2138882 ~ 2192858 (+) True G191241
TU259639 lncRNA downstream 21811 2138882 ~ 2192858 (+) False G191241
TU259641 lncRNA downstream 21811 2138882 ~ 2148801 (+) False G191241
TU259642 lncRNA downstream 21811 2138882 ~ 2158583 (+) False G191241
XM_039783064.1 mRNA upstream 119664 1972182 ~ 1990814 (+) True LOC120547583
XM_039784692.1 mRNA upstream 184932 1885951 ~ 1925546 (+) True LOC120548430
XM_039784691.1 mRNA upstream 228430 1878418 ~ 1882048 (+) True LOC120548429
XM_039784012.1 mRNA upstream 254771 1849313 ~ 1855707 (+) True LOC120548061
XM_039784686.1 mRNA upstream 358501 1749904 ~ 1751977 (+) True LOC120548423
XM_039784136.1 mRNA downstream 76229 2193300 ~ 2200457 (+) True LOC120548117
XM_039784446.1 mRNA downstream 387696 2504767 ~ 2508381 (+) True rps27a
XM_039784693.1 mRNA downstream 412109 2529180 ~ 2637276 (+) True LOC120548433
XM_039784452.1 mRNA downstream 540786 2657857 ~ 2663678 (+) True LOC120548306
XM_039784458.1 mRNA downstream 711988 2829059 ~ 2829748 (+) True LOC120548310
TU259632 other upstream 5781 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other upstream 57477 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1097 other upstream 64659 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259623 other upstream 106250 2002812 ~ 2004228 (+) True G191230
unassigned_transcript_1096 other upstream 146379 1964026 ~ 1964099 (+) True trnat-agu_10
unassigned_transcript_1104 other downstream 1676 2118747 ~ 2118820 (+) True trnat-agu_14
unassigned_transcript_1105 other downstream 4321 2121392 ~ 2121465 (+) True trnat-agu_15
TU259649 other downstream 151757 2268828 ~ 2316235 (+) True LOC120548303
TU260161 other downstream 639083 2756154 ~ 2761679 (+) True G191565
TU260163 other downstream 644979 2762050 ~ 2766062 (+) True G191567

Expression Profile