RNA id: TU259642


Basic Information

Item Value
RNA id TU259642
length 234
lncRNA type inter_gene
GC content 0.50
exon number 2
gene id G191241
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2138882 ~ 2192858 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtctctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtctgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259589 lncRNA upstream 21811 2101708 ~ 2117071 (+) False G191213
TU259582 lncRNA upstream 21811 2110478 ~ 2117071 (+) True G191213
TU259586 lncRNA upstream 21811 2110478 ~ 2117071 (+) False G191213
TU259628 lncRNA upstream 104826 2021693 ~ 2034056 (+) True G191233
TU259595 lncRNA upstream 138838 1999191 ~ 2000044 (+) True G191214
XR_005637146.1 lncRNA downstream 19289 2177872 ~ 2185585 (+) True LOC120548168
TU259655 lncRNA downstream 20596 2179179 ~ 2197853 (+) True G191247
TU259654 lncRNA downstream 40831 2199414 ~ 2199653 (+) True G191246
TU259644 lncRNA downstream 51450 2210033 ~ 2229106 (+) False G191242
TU259643 lncRNA downstream 61970 2220553 ~ 2229106 (+) True G191242
XM_039783717.1 mRNA upstream 27011 2006144 ~ 2111871 (+) False LOC120547899
XM_039784136.1 mRNA downstream 34717 2193300 ~ 2200457 (+) True LOC120548117
XM_039784446.1 mRNA downstream 346184 2504767 ~ 2508381 (+) True rps27a
XM_039784693.1 mRNA downstream 370597 2529180 ~ 2637276 (+) True LOC120548433
XM_039784452.1 mRNA downstream 499274 2657857 ~ 2663678 (+) True LOC120548306
XM_039784458.1 mRNA downstream 670476 2829059 ~ 2829748 (+) True LOC120548310
unassigned_transcript_1105 other upstream 17417 2121392 ~ 2121465 (+) True trnat-agu_15
unassigned_transcript_1104 other upstream 20062 2118747 ~ 2118820 (+) True trnat-agu_14
TU259632 other upstream 34185 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other upstream 85881 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1097 other upstream 93063 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259649 other downstream 110245 2268828 ~ 2316235 (+) True LOC120548303
TU260161 other downstream 597571 2756154 ~ 2761679 (+) True G191565
TU260163 other downstream 603467 2762050 ~ 2766062 (+) True G191567
TU260196 other downstream 616725 2775308 ~ 2778367 (+) True G191573
TU260181 other downstream 664781 2823364 ~ 2921724 (+) False G191571

Expression Profile