RNA id: TU259639


Basic Information

Item Value
RNA id TU259639
length 308
lncRNA type inter_gene
GC content 0.50
exon number 3
gene id G191241
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 2138882 ~ 2192858 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgagtgtgtgtgtgtctgtatgtgtgtgtctgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259589 lncRNA upstream 21811 2101708 ~ 2117071 (+) False G191213
TU259582 lncRNA upstream 21811 2110478 ~ 2117071 (+) True G191213
TU259586 lncRNA upstream 21811 2110478 ~ 2117071 (+) False G191213
TU259628 lncRNA upstream 104826 2021693 ~ 2034056 (+) True G191233
TU259595 lncRNA upstream 138838 1999191 ~ 2000044 (+) True G191214
TU259654 lncRNA downstream 6556 2199414 ~ 2199653 (+) True G191246
TU259644 lncRNA downstream 17175 2210033 ~ 2229106 (+) False G191242
TU259643 lncRNA downstream 27695 2220553 ~ 2229106 (+) True G191242
TU259700 lncRNA downstream 72648 2265506 ~ 2390590 (+) False G191270
TU259705 lncRNA downstream 76772 2269630 ~ 2270193 (+) True G191274
XM_039783717.1 mRNA upstream 27011 2006144 ~ 2111871 (+) False LOC120547899
XM_039784136.1 mRNA downstream 442 2193300 ~ 2200457 (+) True LOC120548117
XM_039784446.1 mRNA downstream 311909 2504767 ~ 2508381 (+) True rps27a
XM_039784693.1 mRNA downstream 336322 2529180 ~ 2637276 (+) True LOC120548433
XM_039784452.1 mRNA downstream 464999 2657857 ~ 2663678 (+) True LOC120548306
XM_039784458.1 mRNA downstream 636201 2829059 ~ 2829748 (+) True LOC120548310
unassigned_transcript_1105 other upstream 17417 2121392 ~ 2121465 (+) True trnat-agu_15
unassigned_transcript_1104 other upstream 20062 2118747 ~ 2118820 (+) True trnat-agu_14
TU259632 other upstream 34185 2047957 ~ 2104697 (+) True G191236
unassigned_transcript_1099 other upstream 85881 2052927 ~ 2053001 (+) True trnat-agu_12
unassigned_transcript_1097 other upstream 93063 2045746 ~ 2045819 (+) True trnat-ugu_6
TU259649 other downstream 75970 2268828 ~ 2316235 (+) True LOC120548303
TU260161 other downstream 563296 2756154 ~ 2761679 (+) True G191565
TU260163 other downstream 569192 2762050 ~ 2766062 (+) True G191567
TU260196 other downstream 582450 2775308 ~ 2778367 (+) True G191573
TU260181 other downstream 630506 2823364 ~ 2921724 (+) False G191571

Expression Profile