alkbh1 (alkbh1)


Basic Information

Item Value
gene id alkbh1
gene name alkbh1
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 5066701 ~ 5081160 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039785563.1
ATGGCCAAGATGGCAGCCTCCCTGGTAGAGAGTGGAGAAGATGCGTTTAGAAAAATGTTCAGGTTTTATAAGAGAAGAAACCCACCGCCAGATTTTAGCGATGTCATTGATTTCTCCAAAGGTTTATCGAGTGACAAGATAGTTCCAGCTATACTGGACCCTTCTGCAGTGAGTGATGTGGAGGCTGCCAGGGTTGGATTACAGTCTGTCAGAGACTGGAGAGCCTTCAGCCTGCAGGGCTACCCAGGGTTCATCTTCATCTCCAACCCGTTCCTGCTGGGCTCACAACCTTTCTGGGTCAGACAGTGTCTGAAGACCTACTCTCAGAAGCCCAATGTCTGCAACCTGGACATGCACATGTCTCCCTCTGACACCCAGGACATCTGGGGAAAGAGTGTTCATAGCCTCAGTTCTCCTCACTCTggaaagagagaaacaaagactcTACTTGACACGCTGCGCTGGGTCACTCTGGGATATCATTACAACTGGGATACCAAGATGTACTCTGCCAACCATTACACTCCGTTCCCAGCTGATCTCCACCTGCTGTCCTTCCAAATAACAGCCGCCTGTGGGTTTCAGGGCTTCAATGCAGAGGCTGGAATCCTCAACTACTACCGATCTGATTCATCTCTGGGAATCCATGTAGATGAATCAGAACTAGATCACAGCCGACCGCTGCTGTCATTCAGTTTTGGGCAGTCAGCCATCTTCCTCCTGGGAGGCCTGCGCAGACAGGACCCCCCAATTGCTATGTACATGCACAGTGGGGACGTGATGGTGATGTCGGGACAGAGCCGCCTCCTTTACCATGCCGTCCCGCGCATCATTTTGGCACCCCGGGGATGTACAGCTTTAGAGATGGAAGGCTGCAGCCTGGCCTCACCTCAACAGGACCACTCTGTGGTGGAGCCGGTGTCAGAGAAGGACTGGGCCGTGTGCTCCAGGTACATCCAGAGCTCCAGAGTGAATGTGACTGTCAGACAGGTGCTGGGGCCTGGCCAGAGCTTCCCAGACACACCATCTGCTCACCAAAGGACTGATGCAGGTCAGACAGTGGGCTACCATGACAGAGCATCAGATGGGGAGAgtgagaacagaaagaggagtaGTAGCTGTGACTCTGTTGATACTGCAGAGACATGACACAGACCACCTGCTGTAACACTCACTTCTTCTTTGAGTCAGCCACTTTCCGACTAGGTAGTTATattataggaaaagtccacttctaagcagttctactaactactctcccccaaaaccgttttttcaatttgcattcgcactggccaggtggcc

Function

symbol description
alkbh1 Predicted to enable ferrous iron binding activity; oxidative DNA demethylase activity; and oxidative RNA demethylase activity. Predicted to be involved in oxidative RNA demethylation and oxidative single-stranded DNA demethylation. Predicted to act upstream of or within DNA repair. Predicted to be active in cytoplasm and nucleus. Orthologous to human ALKBH1 (alkB homolog 1, histone H2A dioxygenase).

NR:

description
nucleic acid dioxygenase ALKBH1

GO: NA

KEGG:

id description
K10765 ALKBH1; alkylated DNA repair protein alkB homolog 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039785563.1 True 1305 mRNA 0.52 6 5066701 5081160

Neighbor

gene id symbol gene type direction distance location
LOC120549660 NA coding upstream 581739 4427812 ~ 4484962 (+)
dio2 LOC103376235 coding upstream 645607 4398650 ~ 4421094 (+)
vrk1 vrk1 coding upstream 1543869 3501371 ~ 3522832 (+)
ak7b NA coding upstream 1682097 3369799 ~ 3384604 (+)
LOC120548881 NA coding upstream 1721117 3344816 ~ 3345584 (+)
ldah ldah coding downstream 113909 5195069 ~ 5224004 (+)
LOC120548885 NA coding downstream 187628 5268788 ~ 5269687 (+)
LOC120549592 LOC104922054 coding downstream 189999 5271159 ~ 5271788 (+)
LOC120548886 syne2,LOC104943765 coding downstream 295838 5376998 ~ 5570547 (+)
LOC120548986 btbd6,LOC104965074,LOC101483787 coding downstream 1340577 6421737 ~ 6426044 (+)
G200148 NA non-coding upstream 7891 5058533 ~ 5058810 (+)
LOC120549011 NA non-coding upstream 101428 4921193 ~ 4965273 (+)
LOC120549012 NA non-coding upstream 184371 4880670 ~ 4882330 (+)
G200105 NA non-coding upstream 193584 4872410 ~ 4873117 (+)
G200092 NA non-coding upstream 253101 4812995 ~ 4813600 (+)
G200152 NA non-coding downstream 3728 5084888 ~ 5085486 (+)
G200153 NA non-coding downstream 5731 5086891 ~ 5087314 (+)
G200150 NA non-coding downstream 7290 5088450 ~ 5089104 (+)
G200149 NA non-coding downstream 15076 5096236 ~ 5096770 (+)
G200188 NA non-coding downstream 81689 5162849 ~ 5163341 (+)
G200129 NA other upstream 12959 5041959 ~ 5053742 (+)
LOC120549013 NA other upstream 41767 5022658 ~ 5024934 (+)
G199885 NA other upstream 1542812 3496080 ~ 3523889 (+)
G199689 NA other upstream 2373248 2692473 ~ 2693453 (+)
G199652 NA other upstream 2518162 2547985 ~ 2548539 (+)
apoba NA other downstream 19308 5100468 ~ 5187407 (+)
LOC120549411 LOC102788407 other downstream 492262 5573422 ~ 5715127 (+)
LOC120549412 NA other downstream 634057 5715217 ~ 5718108 (+)
G200452 NA other downstream 1487116 6568276 ~ 6571757 (+)
G200492 NA other downstream 1596498 6677658 ~ 6682591 (+)

Expression


Co-expression Network