LOC120549592 (LOC104922054)


Basic Information

Item Value
gene id LOC120549592
gene name LOC104922054
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 5271159 ~ 5271788 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786610.1
TTATATCCAAGCTGTGGCTTTGTATCCAAGACAGAGCGTGCACAGTCCTCCTGCAGCCTGTTAGCCCACTACCATGGATGTCAAACTGCTGGCACTGATGGCTCTGCTGTCCGTGGCCACACGTCTACTAACCTCCAACGCAAAGCCCATCAGTCTGCAACAGCGGTGCTCTTGTCGTTCAATCCTGAACACGGTTCCTAAACGCTACGTCAAAGCGCTCGAGTTCCTCCACATACCCAACTGCCCCTTCCAAGTCATTGCCAAGCTAAAGGACAACAGGGAGGTTTGCATCAACCCGGAGACCAAGTGGCTGCAGCAGTACTTAAATAACGACTTTGACAAGGTGCAGACATCTAGCAGAAAcaagaacaagaaaaacaacaagaaaatcTAAACAAAAATGGGAGACATGTATGTTAACAAAACCATTTAAGCATGCAATAGAAACCATTTTGGCATCACTCTACAATACCATATATGCGATACCTTTTAGTCTTTCTGAAATCAACAAAGCTCAACACACATTTTGATCACACATCCAAACCTAAACACCAACTGCAGCTGGGCTCCGAGGGTACAAATGGAATGCTGCTTAGGTCGGATGTCAGCACAGATAAGAGCCTGATGAAG

Function

NR:

description
PREDICTED: stromal cell-derived factor 1 isoform X2

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0090024 negative regulation of neutrophil chemotaxis biological_process
GO:0001764 neuron migration biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0006955 immune response biological_process
GO:2000472 negative regulation of hematopoietic stem cell migration biological_process
GO:0050930 induction of positive chemotaxis biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0048842 positive regulation of axon extension involved in axon guidance biological_process
GO:0030239 myofibril assembly biological_process
GO:0031101 fin regeneration biological_process
GO:0008285 negative regulation of cell population proliferation biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0008354 germ cell migration biological_process
GO:0030900 forebrain development biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0005576 extracellular region cellular_component
GO:0008009 chemokine activity molecular_function
GO:0042056 chemoattractant activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786610.1 True 630 mRNA 0.46 1 5271159 5271788

Neighbor

gene id symbol gene type direction distance location
LOC120548885 NA coding upstream 1472 5268788 ~ 5269687 (+)
ldah ldah coding upstream 47155 5195069 ~ 5224004 (+)
alkbh1 alkbh1 coding upstream 189999 5066701 ~ 5081160 (+)
LOC120549660 NA coding upstream 786197 4427812 ~ 4484962 (+)
dio2 LOC103376235 coding upstream 850065 4398650 ~ 4421094 (+)
LOC120548886 syne2,LOC104943765 coding downstream 105210 5376998 ~ 5570547 (+)
LOC120548986 btbd6,LOC104965074,LOC101483787 coding downstream 1149949 6421737 ~ 6426044 (+)
bag5 bag5 coding downstream 1298398 6570186 ~ 6587823 (+)
ckba ckb,LOC107698148 coding downstream 1379004 6650792 ~ 6658601 (+)
LOC120549784 NA coding downstream 1500339 6772127 ~ 6792523 (+)
G200234 LOC107834262,LOC106910133,LOC106939220,LOC103398986 non-coding upstream 35213 5235670 ~ 5235946 (+)
G200233 LOC107373952,LOC106910133,LOC107834262,LOC106939220,LOC104944801,LOC103398986 non-coding upstream 35511 5235354 ~ 5235648 (+)
G200230 LOC106609078,LOC106584250,LOC106593362,LOC106584751,LOC106581682 non-coding upstream 40300 5229788 ~ 5230859 (+)
G200227 LOC106581682,LOC106584751,LOC106584250,LOC106593362,LOC106579430 non-coding upstream 41422 5229284 ~ 5229737 (+)
G200226 NA non-coding upstream 45706 5225234 ~ 5225453 (+)
G200240 NA non-coding downstream 16600 5288388 ~ 5288737 (+)
G200243 NA non-coding downstream 21420 5293208 ~ 5294300 (+)
G200244 NA non-coding downstream 22595 5294383 ~ 5294753 (+)
G200257 NA non-coding downstream 85833 5357621 ~ 5357822 (+)
LOC120549415 NA non-coding downstream 128212 5400000 ~ 5403178 (+)
apoba NA other upstream 83752 5100468 ~ 5187407 (+)
G200129 NA other upstream 217417 5041959 ~ 5053742 (+)
LOC120549013 NA other upstream 246225 5022658 ~ 5024934 (+)
G199885 NA other upstream 1747270 3496080 ~ 3523889 (+)
G199689 NA other upstream 2577706 2692473 ~ 2693453 (+)
LOC120549411 LOC102788407 other downstream 301634 5573422 ~ 5715127 (+)
LOC120549412 NA other downstream 443429 5715217 ~ 5718108 (+)
G200452 NA other downstream 1296488 6568276 ~ 6571757 (+)
G200492 NA other downstream 1405870 6677658 ~ 6682591 (+)
vps29 eif5,vps29,LOC107595689 other downstream 1460460 6732248 ~ 6747402 (+)

Expression


Co-expression Network