gmfb (gmfb,LOC102779377,LOC106530653)


Basic Information

Item Value
gene id gmfb
gene name gmfb,LOC102779377,LOC106530653
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10909911 ~ 10919714 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039786468.1
TCAAACCAGTCACAAGATGATgtgaagtgaagaaaaaaaaaaaactacaaaaaaacattgaaagcgTCTACCATtcagagcagcagctgcagcttcAGGGAATTTTTAACTCTTCAACAATGAGTGAATCACTGGTGGTGTGCGATGTGGATGAAGATCTGGTTAAAAAGCTGAGGCAGttccgtttcaggaaggagacCAATAATGCGGCCATCGTTATGAAGATTGATAAAGAAAAGCAGCTGGTGATTCTTGAGGAGGAACATGAGgatatTTCTCCTGATGATCTCAAGGATGAACTGCCTGAGCGACAGCCAAGATTTATCGTCTACAGTTATAAATACGAACATGACGATGGACGGGTTTCCTATCCTCTCTGCTTCATCTTCTCCAGCCCAGTGGGTTGCAGACCAGAGCAGCAGATGATGTACGCaggaagcaaaaacaaactggtgCAAACTGTTGAACTGTCTAAGGTGTTTGAGATCAGAAACACAGAGGACCTAACGGAGGAATGGCTTAGAGAGAAACTTGGGTTCTTCGGTTAAAGTCATCTTATCCAGTGGTCTGGGAAGTGAGGAGGATCCAGATTGCACAATCTCTTGGGGAGAACACACCACAGTTAATGTTTCCCTCCTCTGTGTACCAGACCTGATTTAAATATTGTTTGCAAACACCTTCTGTACTCAGTTTTAGGTCTCTTTGGTAGAGTTTACAGAAAAATTACAATTCAGTGTGACACTAACTAAACCTCCCCCATCTGGCAGCCTAAAACTGAAAACACTATTTGACGCAGGTCTGCTTTTGTCTCCTATACAATCTCTCCGCGTGCCAGTTATGTGTCTGTATTGAATTAACACTCCCATAGCTCTTGAATTGGTCAGAAATTGATTGTACTCGTCCGCTCTTCCTAAGTATGTTAATCCAGGAGAATTTAAAGGcattgtaacaaaaaaaaattggtttACTTAAAGTAGTTTACCCTCAACGTTTTTTATTAGCAACACTGAACCTCCTGAGTTTCACCTTTTTATGTTTAATACTTTTTCATAATTTGAGGGAGCCTTttagattttaatttttttcctggTGTATGTAGGGTTATGTAAGCATATACTTTATAGCAGTTTCCttttgttgtgaaaaacaaacttCCTGCCAAAACACATGAACAATCATAGTTACAATTCAGAGAACAATTTAGAGTTCAGCTTTAGTCAGTCTCAGTCTATTAGTTTAAGGGCATTTAGATTATAATTTAGGTAACAAACTGTAATTTGTTACACTAATCACTCCGGTCTACAAAGGACAATAACACTAAGACCATTTGACAAGAGGCATTCCTAAGATATtatatgtaatgtgttgtacCGTCTCCTGTGCACATGAACAAGCTGGCAGAAGCCCTCGAGTGGTGCTTCAGTCCATCCTCAGATCACATCTTTGTATCTGTTTAGAGAGAAAACGGTGTGACTCATGGGTAAAGCTGTATTCTGCCTTTGACCTGCATATTTGTTACAACGATATCCCACTACTGAAAACAATATTTCCACTGAAACATTCCAAACTGAACAATTTATAACTTAGGACAAACCTCCATCTCTGGCGACCATGTCAGTAATCTACTGGGCTACGGGTCACTGTGTCTTTAGGGCGATTGTTAGCTAATATTGTGCATTATACCTATTGCCGTTATTAGTGTTTTTGAATGTTGTGCTTCATTCTGATGTAAAGCCACTTTGATTGCTTAGTGGTAGACACAGCCTTGAGAATGACGGCTGTGACTTCTCCAAAAGCCAGTTGTGCTTAATATTTAGACTTGGTAGGTAAGGGACAGCATCGGGGCAGTTCTGGATGGAAAATACCTTCCATACAGAACAGGGTTTAACCAATATGGCTTTTTGAAGGCTGATACTGATATTTGTGTACTGAATGTGCCAGCAGCTCATATTTCTTGCCAATATTACGTTACAACAGTTACGTTTGATCTGCATTGTTCATGCCCAGGCGTGACATCTCTTCCTCGTTGCCTGCTGAAGATCCTCTAAAACAGCATTTAAACCAATCCAACAAACTAAAACGCCAAACCAGTTGCTAATACTTAGTTGCTCTTAACTGCAGGGCGACCAAGCTTAAATAGTTAAAGCTacataaaatgtactttaaacaggcaaagaaaataaactTGTATTGCTGGTGGTACAGGATGATTCCACTGGCAGATTTCTGATCCTTAATAAAAGCTTAATATCAGCTCTATTGGTCTGACTCTAATAAAGAATAATAGGCACAAATGAATTCCACATGTTCGCTCATCAGTGTTATCTCTCATTGAGAAACTCTTACTTTGGAAACGGATAAGGGAGCATTGTGGCTGATGTAAAGCCCCAAGGCAGGAAATCACCACACAGTAATGTATGACGTCATACTGCTAAGTCTACCATACCATTGTATTTTCttaatgtttttcattttgccACATTAACATCTCTCTTTAAACAATCATCTGGCcaaatgagaatgtgacacaaaTATGTTTTGGGGGGAAATAGAAGGTTGGAAAAGCTTTGCTGGGGgattatgatgttttttttttaagacagtATTTTTTTCCTCTAACTTTCAGATCTGTAAAATCCAGAAGACAGGatcttttgttttgtatttaaatgtgaACTTGGTAGAGATCTGACTCAAAGATAGGTATGCACAATCGCACCATTTCATGGAAATCATCTGTTGGTGTAAAATGTTTGACATTTATCATTAACGACTTGTCAGGGCAGGATTTAATACAACAGGAACAATGGGGTATAACTGTAATCACTTGTTTTGCTGTTTACTGATTCCATCAAAGCTAACATTTACACTGTCAGCTTGAAATTAGTCAGTATTATGCTGCTGTAAAAACACAACTTCAACGTGGGTGATTCtcgtgtttttaatagtttctgTTCTTACTTGAGCGGAAGTTGTATGCTATCGTATTTGGGTAAAGGAAGTTTTAAGACCCTACAACCTGCAAAACCCTTTCAGATCTCGCTGTAAATTTTCAAAAATGCACAGTCAATCTGAAATCAAGGATGTCTGTCTTTATATTTAATTTGAAACGTGCAATGTACTGATTTCAGtttgaatataaaaacatattcaGCTGTtatctttttaaaacaaaattctTAAAACCTCTGTAATGTGGAGAGCTACTGTAAAAGATGTGCATGCTTTAATGTATGTCTGAACGGGTGTCATATGCTGCTCTGTTGCATGCATTTTACAATATTAAGTTAATTTTATTTGACTGAATATATTTGCATACAAATTCCTATAAAAGGGGCAACATTTGCATCTCAAACATCTGGTCTCAGCTGTGTTCTTATTCTATCTGAAATATTTACATACTGCTGTGCTGACAGTACTTTTGTTGAAGAAACCCTCTGCTTATGCCATTTTTCATGGAAATGAGTGGTAATAGCTGTCCATGAATCATGTATCAGAATCAATTTTCCGAATATATGGTCTACTTAATTTAGAGTTCCCTTTGGTTTTAAGCCATGTATCTGGTTATGTCCTCTGGATCTAGTAGCTTTCCCTCCTATGTGGTAAACCTGTTGTATATTTTGCCTCTTGAGTTTTTTACTTTAACTTGCAAATGTGTTGTTCAGCTCTTGGTATCCTCTCTGATCAAATGCTTACTATtctattttctttcctttttaagAAAAACACCTGAGACATGTATCATTACAAGCTGCCTCGTGGCATCAGTGAAACTTGAGATATTTGTATTTTCCCATACTTTATAAAGTGTCTTGTCCTATCATCCAAATAAAATGACAGTGATGTTTAA

Function

symbol description
gmfb Predicted to enable Arp2/3 complex binding activity. Acts upstream of or within reactive gliosis. Predicted to be active in actin cortical patch. Is expressed in head; hindbrain; and telencephalon. Orthologous to several human genes including GMFB (glia maturation factor beta).

NR:

description
glia maturation factor beta

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039786468.1 True 3850 mRNA 0.38 7 10909911 10919714

Neighbor

gene id symbol gene type direction distance location
LOC120549517 ttc9 coding upstream 453321 10451650 ~ 10456590 (+)
oip5 NA coding upstream 550066 10355927 ~ 10359845 (+)
si:ch211-10a23.2 LOC106954063,LOC103365732 coding upstream 668753 10235018 ~ 10241158 (+)
rdh12 rdh12,LOC102788257,LOC106922439 coding upstream 716797 10182109 ~ 10193114 (+)
arg2 arg2 coding upstream 733926 10167377 ~ 10175985 (+)
cnih1 cnih1,LOC107736564,LOC107683416 coding downstream 554 10920268 ~ 10927808 (+)
LOC120548749 LOC100706276,LOC102792403,LOC101466565 coding downstream 14548 10934262 ~ 10944673 (+)
dmac2l atp5s coding downstream 77083 10996797 ~ 11000545 (+)
atl1 atl1 coding downstream 132977 11052691 ~ 11066039 (+)
LOC120549356 LOC102776316 coding downstream 192208 11111922 ~ 11116985 (+)
G201654 LOC103359954,LOC101061771,LOC101161201 non-coding upstream 3991 10900677 ~ 10905920 (+)
G201622 dcaf5 non-coding upstream 109971 10783955 ~ 10799940 (+)
G201619 NA non-coding upstream 152421 10756500 ~ 10757490 (+)
G201607 NA non-coding upstream 161735 10684301 ~ 10748176 (+)
G201613 actn1,LOC101075286,LOC107680897 non-coding upstream 198915 10702853 ~ 10710996 (+)
G201714 NA non-coding downstream 209267 11128981 ~ 11134169 (+)
G201720 NA non-coding downstream 268316 11188030 ~ 11188350 (+)
LOC120549871 NA non-coding downstream 405880 11325594 ~ 11366801 (+)
G201805 NA non-coding downstream 420766 11340480 ~ 11341703 (+)
G201815 NA non-coding downstream 489866 11409580 ~ 11411142 (+)
ndufaf1 ndufaf1,LOC102785420 other upstream 558785 10345019 ~ 10351126 (+)
G201399 NA other upstream 792305 10112020 ~ 10117606 (+)
LOC120549807 NA other upstream 817321 10091682 ~ 10092590 (+)
LOC120549808 NA other upstream 826968 10080725 ~ 10082943 (+)
LOC120548906 NA other upstream 829255 10079725 ~ 10080656 (+)
LOC120549737 gbg2,gng2,LOC108239039,LOC106603227 other downstream 371385 11291099 ~ 11312327 (+)
smc6 LOC103364213,LOC106962855,LOC103144702,LOC100705580 other downstream 545697 11465411 ~ 11486581 (+)
si:ch73-242m19.1 NA other downstream 604691 11524405 ~ 11562012 (+)
tulp4b LOC102297897,LOC102791722,LOC102199752,LOC101471710 other downstream 968849 11888563 ~ 11904206 (+)
slc18b1 slc18b1 other downstream 986127 11905841 ~ 11913857 (+)

Expression


Co-expression Network