ndufaf1 (ndufaf1,LOC102785420)


Basic Information

Item Value
gene id ndufaf1
gene name ndufaf1,LOC102785420
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10345019 ~ 10351126 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU272984
TGCACTACAGCTACATTCAAGATACCCTTCTCCAAGTTCTTCCTCACACATCGTGGGAGGATACAAGACGACCAGCATCCTCTCTGGCTGGACAAGGTTAACACCATTGGATTTACCTTGGGGGATAAAGCGGACGGTCCGTTCCAGCTGGAGATCGATTTTGTTGGCGTCTGCAAAGATTATGCACACACGGAGGAGTTTGCTTACGAGGTGTACAAGAGGAATCCTGAAATTTGAGAGCAAGTGCTACAATACTGCAGATGAACGGTTATTGAATAATGGTGGCGGCGTTATATTAACTACCAACAAATGTTTCTAGCAAATGAACTGTGACACTTTAGTAACGGTGGAGTAACTTCTTATATaatacataattgcaaaagggttctccaatgttttctcagttagccttttaaaatgatagattagtaaacagaatgggcctttagaacattggatgaatggttgctgataatgggcaatgtagatattgcgttacagatcagccacttctttctacaacagtcgagaacccttttgaaattatgtaagcacataatgtaatctggaAACTggtgccctggttaaaaaacaacaatgcaactgatTTGAATTTCTacgtgaccccaaacttttgaccggtagtgtatgtatGTGGTTATAAAATAATCCAATTCTGGACTGGTTAGGAGATAAGACAACTTTTCCTCCATTCCAGGACATTAACTGAGACCATCGTACTGCTCTTTCACAACAATACCAGGTTGTTTATTGTGTTCCAAGTCCTGTATGTGACACATTTACATCCAACAGATCATGTCAAACAACCAG
>XM_039786500.1
GCTCTGCAGTCAGCCACACAAAGGCAGTACTGCGCATGCGCGGTAGTATTGATACCATAGTTGCGGCTGGATTTTATAGCtctcattgaaaataaaatgtatatttatgcTCATATTCATCCATATGTATGTACTTATCATATTACTTTGTTTAACTCAAGAAAAACGTTGGGCCAGGATGCGAGGACATTGGAAGTTAGCTGAAGGGACTTTCAATTCACTCATACGCGCGGCAACTCGCCTCCTCCAGTCATTACTATGAGGGGAAGGCGGCAGAAGGGAAGCGGTTTAATCACTGCGGTAGGGGGTATGAAGCGGTTGCCGCACTCGTGACCGCGCACACTGTGCGTCGTGCTGAACCATGGATTTATAATAGTAACGTGCTGAACTCCCGGCAGGAATCGCTTTTTGAGAAACGCTCTTGCATGCGGGCGATCACCAGGGCGGTTGCCGCACGGCGGTGTGAAGAACGGAACTACATATTGACAGGGAGTGCGTCAGTCAGGACAGGAATCTTTGGTGCACTACAGCTACATTCAAGGTCCACGATAAATCAACCTTTTACTGTTGTAGCTAGTTAAACCTGTTGTCCCGTGTGTAATATGTCTTGGATTTGTAAATGAGTGTACACGACCAGTTTATAAATGTGTTCAATCCATAACAGATAACTTTAATGGTTTtgtcaaattaaaacaagaacagAAGGCGGGGAAATATCCACCCGTCACCTTTTGGTACGACATGATCACACAGTGACTGGTCCATATCACTACTGAAATGTCTCTGCCAAAGATCACCCGTCTCCCCTCAGTGAGGCTGCTGAGCTCCATCCACCAGCAGCTGCTCCTCCCCTCCATCCCCCCTCTCACTGGGCCCAAAAGAGCTGTGAGTCAGGGTGAATACAGACGACCCGGCCAGCCCAAAGTAGACAAGTTCCCGTGGCAGCCGATTAACTTTGGCTTCTCAAAGGGTTTTGAGGGGGTGAAGAAGCATTTCGCGCTCCTGAAGAAGGAGTTTTCCGACCGCTGGGTCGGTCCGCAAGGCAAACCGATCCTTGAGCACATGCTGGAGCAGAACCAAGTGCTGTGGGAGTTCAGAGGCCCGGAGAGCCTGGAGCAGTGGACGGTGTCCTCGGATCAAGAGATAGGAGGCCAAAGTGAAGTTCACTTGAAGCTGGGCAAAAACCACAAcacctgtttactgtacgggactctgaGCTCTACTCCTCCGAGGGATGGAGAAACACGCTACAGTGGCTACTGCACCATGCGCTCAAAGCAACCACTGGCTTCATTCGATAGAAAAAAGCACTACGATTGGTCCAGTTTCAACACCCTGCATTTGCGAGTGCGCGGTGATGGCCGTCCGTGGATGATCAACATCGCCACAGAAACCTACTTCTCGCACCAGAAAGATGACATATACAATTATTTCCTGTATACCAGGGGAGGACCTTACTGGCAGGATGTCAAGATACCCTTCTCCAAGTTCTTCCTCACACATCGTGGGAGGATACAAGACGACCAGCATCCTCTCTGGCTGGACAAGGTTAACACCATTGGATTTACCTTGGGGGATAAAGCGGACGGTCCGTTCCAGCTGGAGATCGATTTTGTTGGCGTCTGCAAAGATTATGCACACACGGAGGAGTTTGCTTACGAGGTGTACAAGAGGAATCCTGAAATTTGAGAGCAAGTGCTACAATACTGCAGATGAACGGTTATTGAATAATGGTGGCGGCGTTATATTAACTACCAACAAATGTACCACCTTCTTGAGGTGGACAATATATTTCCACCCCATCCATCATTGCTGGTAACACTTATTTTAAAGACAAGGGACATTTGCATTCTAGCAAATGAACTGTGACACTTTAGTAACGGTGGAGTAACTTCTTATATaatacataattgcaaaagggttctccaatgttttctcagttagccttttaaaa
>XR_005637396.1
GCTCTGCAGTCAGCCACACAAAGGCAGTACTGCGCATGCGCGGTAGTATTGATACCATAGTTGCGGCTGGATTTTATAGCtctcattgaaaataaaatgtatatttatgcTCATATTCATCCATATGTATGTACTTATCATATTACTTTGTTTAACTCAAGAAAAACGTTGGGCCAGGATGCGAGGACATTGGAAGTTAGCTGAAGGGACTTTCAATTCACTCATACGCGCGGCAACTCGCCTCCTCCAGTCATTACTATGAGGGGAAGGCGGCAGAAGGGAAGCGGTTTAATCACTGCGGTAGGGGGTATGAAGCGGTTGCCGCACTCGTGACCGCGCACACTGTGCGTCGTGCTGAACCATGGATTTATAATAGTAACGTGCTGAACTCCCGGCAGGAATCGCTTTTTGAGAAACGCTCTTGCATGCGGGCGATCACCAGGGCGGTTGCCGCACGGCGGTGTGAAGAACGGAACTACATATTGACAGGGAGTGCGTCAGTCAGGACAGGAATCTTTGGTGCACTACAGCTACATTCAAGGTCCACGATAAATCAACCTTTTACTGTTGTAGCTAGTTAAACCTGTTGTCCCGTGTGTAATATGTCTTGGATTTGTAAATGAGTGTACACGACCAGTTTATAAATGTGTTCAATCCATAACAGATAACTTTAATGGTTTtgtcaaattaaaacaagaacagAAGGCGGGGAAATATCCACCCGTCACCTTTTGGTACGACATGATCACACAGTGACTGGTCCATATCACTACTGAAATGTCTCTGCCAAAGATCACCCGTCTCCCCTCAGTGAGGCTGCTGAGCTCCATCCACCAGCAGCTGCTCCTCCCCTCCATCCCCCCTCTCACTGGGCCCAAAAGAGCTGTGAGTCAGGGTGAATACAGACGACCCGGCCAGCCCAAAGTAGACAAGTTCCCGTGGCAGCCGATTAACTTTGGCTTCTCAAAGGGTTTTGAGGGGGTGAAGAAGCATTTCGCGCTCCTGAAGAAGGAGTTTTCCGACCGCTGGGTCGGTCCGCAAGGCAAACCGATCCTTGAGCACATGCTGGAGCAGAACCAAGTGCTGTGGGAGTTCAGAGGCCCGGAGAGCCTGGAGCAGTGGACGGTGTCCTCGGATCAAGAGATAGGAGGCCAAAGTGAAGTTCACTTGAAGCTGGGCAAAAACCACAAcacctgtttactgtacgggactctgaGCTCTACTCCTCCGAGGGATGGAGAAACACGCTACAGTGGCTACTGCACCATGCGCTCAAAGCAACCACTGGCTTCATTCGATAGAAAAAAGCACTACGATTGGTCCAGTTTCAACACCCTGCATTTGCGAGTGCGCGGTGATGGCCGTCCGTGGATGATCAACATCGCCACAGAAACCTACTTCTCGCACCAGAAAGATGACATATACAATTATTTCCTGTATACCAGGGGAGGACCTTACTGGCAGGATGTCAAGATACCCTTCTCCAAGTTCTTCCTCACACATCGTGGGAGGATACAAGACGACCAGCATCCTCTCTGGCTGGACAAGGTTAACACCATTGGATTTACCTTGGGGGATAAAGCGGACGGTCCGTTCCAGCTGGAGATCGATTTTGTTGGCGTCTGCAAAGATTATGCACACACGGAGGAGTTTGCTTACGAGGTGTACAAGAGGAATCCTGAAATTTGAGAGCAAGTGCTACAATACTGCAGATGAACGGTTATTGAATAATGGTGGCGGCGTTATATTAACTACCAACAAATGTTTCTAGCAAATGAACTGTGACACTTTAGTAACGGTGGAGTAACTTCTTATATaatacataattgcaaaagggttctccaatgttttctcagttagccttttaaaa

Function

symbol description
ndufaf1 Predicted to enable unfolded protein binding activity. Predicted to be involved in mitochondrial electron transport, NADH to ubiquinone and mitochondrial respiratory chain complex I assembly. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in nuclear type mitochondrial complex I deficiency 11. Orthologous to human NDUFAF1 (NADH:ubiquinone oxidoreductase complex assembly factor 1).

NR:

description
complex I intermediate-associated protein 30, mitochondrial

GO: NA

KEGG:

id description
K18159 NDUFAF1, CIA30; NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1

RNA

RNA id representative length rna type GC content exon number start site end site
TU272984 False 831 lncRNA 0.40 4 10345539 10351126
XM_039786500.1 True 1954 mRNA 0.48 5 10345019 10350713
XR_005637396.1 False 1870 transcript 0.48 6 10345019 10350713

Neighbor

gene id symbol gene type direction distance location
si:ch211-10a23.2 LOC106954063,LOC103365732 coding upstream 103861 10235018 ~ 10241158 (+)
rdh12 rdh12,LOC102788257,LOC106922439 coding upstream 151905 10182109 ~ 10193114 (+)
arg2 arg2 coding upstream 169034 10167377 ~ 10175985 (+)
LOC120548904 NA coding upstream 303161 10041211 ~ 10041858 (+)
LOC120548903 NA coding upstream 304257 10040143 ~ 10040762 (+)
oip5 NA coding downstream 4801 10355927 ~ 10359845 (+)
LOC120549517 ttc9 coding downstream 100524 10451650 ~ 10456590 (+)
gmfb gmfb,LOC102779377,LOC106530653 coding downstream 558785 10909911 ~ 10919714 (+)
cnih1 cnih1,LOC107736564,LOC107683416 coding downstream 569142 10920268 ~ 10927808 (+)
LOC120548749 LOC100706276,LOC102792403,LOC101466565 coding downstream 583136 10934262 ~ 10944673 (+)
G201480 NA non-coding upstream 49522 10273072 ~ 10295497 (+)
G201409 NA non-coding upstream 192260 10151901 ~ 10152759 (+)
G201396 NA non-coding upstream 250268 10094391 ~ 10094751 (+)
G201314 NA non-coding upstream 438153 9906497 ~ 9906866 (+)
G201309 NA non-coding upstream 488292 9831637 ~ 9856727 (+)
G201478 lgmn,LOC102784085 non-coding downstream 27755 10378881 ~ 10385415 (+)
G201523 NA non-coding downstream 34459 10385585 ~ 10388109 (+)
G201558 NA non-coding downstream 74039 10425165 ~ 10425815 (+)
G201589 slc8a3,LOC102781970 non-coding downstream 137779 10488905 ~ 10495727 (+)
G201591 slc8a3 non-coding downstream 146527 10497653 ~ 10497925 (+)
G201399 NA other upstream 227413 10112020 ~ 10117606 (+)
LOC120549807 NA other upstream 252429 10091682 ~ 10092590 (+)
LOC120549808 NA other upstream 262076 10080725 ~ 10082943 (+)
LOC120548906 NA other upstream 264363 10079725 ~ 10080656 (+)
LOC120548905 NA other upstream 294076 10050248 ~ 10050943 (+)
LOC120549737 gbg2,gng2,LOC108239039,LOC106603227 other downstream 939973 11291099 ~ 11312327 (+)
smc6 LOC103364213,LOC106962855,LOC103144702,LOC100705580 other downstream 1114285 11465411 ~ 11486581 (+)
si:ch73-242m19.1 NA other downstream 1173279 11524405 ~ 11562012 (+)
tulp4b LOC102297897,LOC102791722,LOC102199752,LOC101471710 other downstream 1537437 11888563 ~ 11904206 (+)
slc18b1 slc18b1 other downstream 1554715 11905841 ~ 11913857 (+)

Expression


Co-expression Network