G201478 (lgmn,LOC102784085)


Basic Information

Item Value
gene id G201478
gene name lgmn,LOC102784085
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 10378881 ~ 10385415 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU272988
TAATTTTTTAGCAGTTTTTATCGTTCAGATTTATTTCAAGATCCCAGTGTGTTACAACAAAGACTCTTGAGGTTGAACAAACATTCAATGTTCAGTGGTATGTCCTTTACATGTCAATCAACCGTTCATGCCAGGCCCAGTTGTATTTGTAGTGGTTGACTGCAGCCTGGTAGCACTGATGCTGGGTGAGTTTGGCTCTGCCATTGAGAACATCCTCGGCCTTGAGGTGGTTACCAGTCACCCTCTCAACCACTTGGCGCATAGTATCAGCCAGCATCTCCCTGACctTGCGATATCATTGGTGGACATCATCTTCCTCTTGAGGATGGCCAGAGGAACGTCAGGGCTCGGGGTCAGATCAGGATTTTGAACCGGCTGCAGGGTCATTGGAGGAACGGGTTGGCCGCTGGCCTTGGGGTTACCCTGAAACGCTATGACCTTCATGTGGCCCATAGTCTATATAGAGAGTGAGGAACTCAAGATAAGTATCAAAATAAGGGCAAGGAATCAAACATTTC
>TU272989
TAATTTTTTAGCAGTTTTTATCGTTCAGATTTATTTCAAGATCCCAGTGTGTTACAACAAAGACTCTTGAGGTTGAACAAACATTCAATGTTCAGTGGTATGTCCTTTACATGTCAATCAACCGTTCATGCCAGGCCCAGTTGTATTTGTAGTGGTTGACTGCAGCCTGGTAGCACTGATGCTGGGTGAGTTTGGCTCTGCCATTGAGAACATCCTCGGCCTTGAGGTGGTTACCAGTCACCCTCTCAACCACTTGGCGCATAGTATCAGCCAGCATCTCCCTGACctTGCGATATCATTGGTGGACATCATCTTCCTCTTGAGGATGGCCAGAGGAACGTCAGGGCTCGGGGTCAGATCAGGATTTTGAACCGGCTGCAGGGTCATTGGAGGAACGGGTTGGCCGCTGGCCTTGGGGTTACCCTGAAACGCTATGACCTTCATGTGGCCCATAGTCTTGTTTCCAAACTGCTGGACGTGgctggtgtttgtgtgtctctttacGATCTTAAACTGCTTAGTCAACGTTTCCTTTTTCAGGTCCTCCACATCGGAGTCCTCCATCCAGTTAACGCTGTACCAGTCTCCCAGGTAAGTGTCCCTCTTCTCGTCAAAGTAGCAGGCGTAAGAGGACTCGTCGGAGTTGGCTGCTGTGGTGGCGTACACGTCTATGTCAGCAGGCAGGTCGGTCATCATTGACCCGGACTCACATGCCTCGATGTAGAACACCATCTTGTTGTATTTCTTATTTTCGTGCATGTATTTAATGGCTTCTTGGAGGTCTGCAACATTGAGGTCATCAGTGGGAAAGGCAAGCATACCAGGCGCCCCGTGGTCGGTAAAGTACACAAACACGTGATCGTTGGGGCCGCTGCCAAGACAAACAGACCAAAGTTAGGGAAAAGAATTCTAGATAAACCAGATTTTGTGCTGCTCGGATTACTGTCATCTCTTCAAGAGAGTCAatactcctcctctctcttgttAAATGTGATCACTTGCCTCTTCAGCACTTTTCCAGAGCCACCTTTGACTTTTGAGGAGTCACCCTTCAGCACTGCCAAGAAGTTTTGTGGGGTC
>TU272991
cacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacactgtatcaTCATCTAGTATACTACTACAATACTTTCTTCCTGTCTCCTTTACGGTCACATCACATGGCTTCCAGTCATCCAAGTCATGGACCAATTTGCTTAAGTAAGCTTgttcttacttacttacttcccCTTTACGACCACGGACCGTGCaaaatttatgtttttgtctgatCATTTCCGACAGCAGGGCTTGACTCTCACAAAAGACGCACCAACTCTTAAACACGTTCCATTTATCAGGTTAAAATAAGTGATTTACGAGTTACAAATTTGTGCAGTTACGTGAGTTTGGTGAATCCGATTTAGGACACCGGTACTCAAAGAAAAGAATTCTTGCATGTGGTGTTAATACAAGCTCTCTGGATTAGAGTCAGCTGaagtagaaaaaaagcaaatgaaTACCTACTGATGAATAGCATGTGAAACACATCTGGCGTTTTCACTTTTGAAGAGACATGGGAGTAACGCCAGATACACACCGCCTGCAAGTGCTGCTACCGCTGTGACGAGCAGATTTGTGACCAATCGCGCGGCTTTCTGTTGATACCAGCCTCGCATTTCTCCGCCGTGGTCACAATATTTCTTTTACTGCAagttagtgttaattttgtcacctatttttaatttcgtcttagtcttgtgccaaacatttttgttagtcaagttttagtcgactaaaagtctcgccattttagtcaagttttagtcaaaacattttagtctttttttaaataaattatttctgataatcatttcagtcaaatagttataaatataaataaattatataaagttatataaatattgagcctcttccttatttcaccagtaaacgacaaaaacaaccactgcattggaaaaggatattttacaataaaataaatgcagcacgaaactggcgaggcgtatttcaagtgaacgcaacatatgtgttgtttttcagacaacggcagctacagactgtcgtacgtctcgtgttggaatcctacacagtgaattagagacaaacctttacaccgtttagctgtcagcattgtaacccttttatatatatgtcaatgattgtaaccgtgtttactccaactgctagctaacggtatgctaacgttacctgctgccaagtgtagtgttaactagcgccccatgcagctatgtttcggttgactctaacgtccgtttaggagcatcagagagaagcgcaggcatttaagtggcaccaaaatctgcgttgctattcggtccggtagataactgtcgttagggcacctgtcggtgccgtagcaccgggtctcggtaacagctgaatattctatctcatgatgaaaaagtagagacgattgtagacgaaaatgaagagagattttatcttagtttttattttatgcaaaacattttagtctcgtcttttttcgtcaacaataatgcatgttaatttagtcttagtcagcgtttttggacattggtgcagtctcgtcatcgtctcgtcttagtcatggaaaaaaaggtcgttgacgaacatatttagtctcgtctcgtctgacgaaattaacactactgcAAGTTTCAACCATCAGCTATAGAGGAATCCTGCCAAAACTAACTCTAATCAACCGTTAGGTTAACCACCAACACTCTGTACATTTGGATTGGGTGGCTCGCGGccttctttgcagctctacctGAGTTTTGTGCCAGTTGAAGCAGTTGTATTTGTAGTGGTTGACTGCAGCCTGGTAGCACTGATGCTGGGTGAGTTTGGCTCTGCCATTGAGAACATCCTCGGCCTTGAGGTGGTTACCAGTCACCCTCTCAACCACTTGGCGCATAGTATCAGCCAGCATCTCCCTGACctTGCGATATCATTGGTGGACATCATCTTCCTCTTGAGGATGGCCAGAGGAACGTCAGGGCTCGGGGTCAGATCAGGATTTTGAACCGGCTGCAGGGTCATTGGAGGAACGGGTTGGCCGCTGGCCTTGGGGTTACCCTGAAACGCTATGACCTTCATGTGGCCCATAGTCTTGTTTCCAAACTGCTGGACGTGgctggtgtttgtgtgtctctttacGATCTTAAACTGCTTAGTCAACGTTTCCTTTTTCAGGTCCTCCACATCGGAGTCCTCCATCCAGTTAACGCTGTACCAGTCTCCCAGGTAAGTGTCCCTCTTCTCGTCAAAGTAGCAGGCGTAAGAGGACTCGTCGGAGTTGGCTGCTGTGGTGGCGTACACGTCTATGTCAGCAGGCAGGTCGGTCATCATTGACCCGGACTCACATGCCTCGATGTAGAACACCATCTTGTTGTATTTCTTATTTTCGTGCATGTATTTAATGGCTTCTTGGAGGTCTGCAACATTGAGGTCATCAGTGGGAAAGGCAAGCATACCAGGCGCCCCGTGGTCGGTAAAGTACACAAACACGTGATCGTTGGGGCCGCTGCCAAGACAAACAGACCAAAGTTAGGGAAAAGAATTCTAGATAAACCAGATTTTGTGCTGCTCGGATTACTGTCATCTCTTCAAGAGAGTCAatactcctcctctctcttgttAAATGTGATCACTTGCCTCTTCAGCACTTTTCCAGAGCCACCTTTGACTTTTGAGGAGTCACCCTTCAGCACTGCCAAGAAGTTTTGTGGGGTC

Function

symbol description
lgmn Predicted to enable cysteine-type endopeptidase activity. Acts upstream of or within several processes, including axon regeneration; negative regulation of bone mineralization; and negative regulation of osteoblast differentiation. Is expressed in several structures, including cardiovascular system; immature eye; mesoderm; nervous system; and pleuroperitoneal region. Orthologous to human LGMN (legumain).

NR:

description
PREDICTED: legumain

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU272988 False 518 lncRNA 0.47 3 10378881 10382515
TU272989 False 1080 lncRNA 0.49 8 10378881 10385415
TU272991 True 2733 lncRNA 0.44 7 10380131 10385415

Neighbor

gene id symbol gene type direction distance location
oip5 NA coding upstream 19036 10355927 ~ 10359845 (+)
si:ch211-10a23.2 LOC106954063,LOC103365732 coding upstream 137723 10235018 ~ 10241158 (+)
rdh12 rdh12,LOC102788257,LOC106922439 coding upstream 185767 10182109 ~ 10193114 (+)
arg2 arg2 coding upstream 202896 10167377 ~ 10175985 (+)
LOC120548904 NA coding upstream 337023 10041211 ~ 10041858 (+)
LOC120549517 ttc9 coding downstream 66235 10451650 ~ 10456590 (+)
gmfb gmfb,LOC102779377,LOC106530653 coding downstream 524496 10909911 ~ 10919714 (+)
cnih1 cnih1,LOC107736564,LOC107683416 coding downstream 534853 10920268 ~ 10927808 (+)
LOC120548749 LOC100706276,LOC102792403,LOC101466565 coding downstream 548847 10934262 ~ 10944673 (+)
dmac2l atp5s coding downstream 611382 10996797 ~ 11000545 (+)
G201505 NA non-coding upstream 10751 10330830 ~ 10368130 (+)
G201480 NA non-coding upstream 83384 10273072 ~ 10295497 (+)
G201409 NA non-coding upstream 226122 10151901 ~ 10152759 (+)
G201396 NA non-coding upstream 284130 10094391 ~ 10094751 (+)
G201314 NA non-coding upstream 472015 9906497 ~ 9906866 (+)
G201523 NA non-coding downstream 170 10385585 ~ 10388109 (+)
G201558 NA non-coding downstream 39750 10425165 ~ 10425815 (+)
G201589 slc8a3,LOC102781970 non-coding downstream 103490 10488905 ~ 10495727 (+)
G201591 slc8a3 non-coding downstream 112238 10497653 ~ 10497925 (+)
G201594 NA non-coding downstream 239230 10624645 ~ 10624846 (+)
ndufaf1 ndufaf1,LOC102785420 other upstream 27755 10345019 ~ 10351126 (+)
G201399 NA other upstream 261275 10112020 ~ 10117606 (+)
LOC120549807 NA other upstream 286291 10091682 ~ 10092590 (+)
LOC120549808 NA other upstream 295938 10080725 ~ 10082943 (+)
LOC120548906 NA other upstream 298225 10079725 ~ 10080656 (+)
LOC120549737 gbg2,gng2,LOC108239039,LOC106603227 other downstream 905684 11291099 ~ 11312327 (+)
smc6 LOC103364213,LOC106962855,LOC103144702,LOC100705580 other downstream 1079996 11465411 ~ 11486581 (+)
si:ch73-242m19.1 NA other downstream 1138990 11524405 ~ 11562012 (+)
tulp4b LOC102297897,LOC102791722,LOC102199752,LOC101471710 other downstream 1503148 11888563 ~ 11904206 (+)
slc18b1 slc18b1 other downstream 1520426 11905841 ~ 11913857 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G65659 NA non-coding CI01000010 null 8435708 ~ 8442201 (+)
bowfin (Amia calva) AMCG00000078 NA coding CM030141.1 CM030141.1 3403359 ~ 3416557 (+)