AMCG00000078


Basic Information

Item Value
gene id AMCG00000078
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030141.1
NCBI id CM030141.1
chromosome length 22147039
location 3403359 ~ 3416557 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00000078
AGCATCAGGATGTATGTGAAGACAGTAGCACTGCTGGGCCTAAGCCTGGCCCTCGCAGTGAGTGCTCTTCCTCTGCAAGACACGGAAGATGGCGGCAAACACTGGGTGGTCATCGTTGCTGGCTCCAACGGCTGGTACAACTACAGACACCAGATTATCGTCATGATGTACGATGACCTTGCACATAATGAAGAgAATCCCACCCCAGGTATTGTGATCAACAGGCCCAACGGCACTGATGTGTATAAAGGAGTGCTCAAGGATTACATTGGGGATGATGTGACCCCACAGAACTTCTTGGCTGTGTTGAAAGGGGACGCGCAGGCAGTGAATGGAGTGGGCTCTGGAAAAGTGCTGAAGAGGCAAGTACTTGGGCCCAAGgatcatgtgtttgtttatttcactgatCATGGAGCTCCAGGTCTGCTCGCCTTCCCAAATGATGACATGGTGTTTTACATTGAAGCCTGCGAATCTGGATCAATGATGAATCACCTGCCAACTGATATTGATGtgtacGCCACCACAGCGTCCAACCCCCACGAGTCCTCCTACGCCTGCTACTACGATGACAAGCGAGACACCTACCTGGGAGACGTGTACAGTGTCAGCTGGATGGAAGATTCAGATGTGACGCTGGCACACATGAAGGTGATGCAGTTCCAGGGCAGTGGGAAGGCTAACACCCAGCCTGCCACCCCCCTCACCCTGTCGCCCATAGCGGACCCTGAAATCATCCCCAGTCCCGACGTCCCCCTCGCCATCCTCAAGAGGAAACTCATGGCCACCAATGACATCCCCAAGGCCAGGGGCTACTTGATGGAAATCAACACACACCTGAAGaCCAGGGAGCTGCTGAGAGAGACCATGAGGAGAGTGGTCATGATGGTCACCAACTCCAAGGACAAGACTGAGCAGATCCTCAATGACAGGCTGGAACTGACGCAGCACCAGTGTTACCAGCCCGCAGTGGAGCACTTCAAGAAAAACTGCTTCAACTGGCACACGCCCCAGTATGAGTATGCACTAAGGCATCTGTACGCCCTCGTGAACCTGTGCGAAGGAGGATACCCCACTGACCGGATCCAGATGGCTATGGACGAGGTGTGCTTTTTCAGACTGTAG

Function

GO: NA

KEGG:

id description
K01369 LGMN; legumain

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00000078 True 1125 mRNA 0.53 11 3403359 3416557

Neighbor

gene id symbol gene type direction distance location
AMCG00000075 NA coding upstream 295484 3076185 ~ 3107875 (+)
AMCG00000085 nkx2.1,nkx2-1,LOC107679765,LOC107666245,LOC107582966,LOC107578306 coding upstream 543175 2858153 ~ 2860184 (+)
AMCG00000088 NA coding upstream 562324 2839915 ~ 2841035 (+)
AMCG00000086 slc25a21,LOC107679800 coding upstream 612872 2776667 ~ 2790487 (+)
AMCG00000074 LOC106602716,LOC107752725 coding upstream 795368 2572779 ~ 2607991 (+)
AMCG00000079 NA coding downstream 26956 3443513 ~ 3464306 (+)
AMCG00000081 NA coding downstream 47806 3464363 ~ 3469964 (+)
AMCG00000082 adssl1,pura1 coding downstream 107043 3523600 ~ 3536734 (+)
AMCG00000083 NA coding downstream 122131 3538688 ~ 3541156 (+)
AMCG00000090 NA coding downstream 231249 3647806 ~ 3680717 (+)
G147856 NA non-coding upstream 107491 3216784 ~ 3295868 (+)
G147842 NA non-coding upstream 264170 3135920 ~ 3139189 (+)
G147814 NA non-coding upstream 367013 3035019 ~ 3036346 (+)
G147809 NA non-coding upstream 377570 3025378 ~ 3025789 (+)
G147808 NA non-coding upstream 380091 3022938 ~ 3023268 (+)
G147994 NA non-coding downstream 214025 3630582 ~ 3631455 (+)
G148010 NA non-coding downstream 271406 3687963 ~ 3688231 (+)
G148036 NA non-coding downstream 311768 3728325 ~ 3759003 (+)
G148075 NA non-coding downstream 459814 3876371 ~ 3879521 (+)
G148119 NA non-coding downstream 595097 4011654 ~ 4013403 (+)
G147726 LOC104962440 other upstream 999387 2403730 ~ 2403972 (+)
AMCG00000073 mta1,LOC107679789,LOC107666257,LOC107600838 other upstream 1344589 2036023 ~ 2058770 (+)
G147416 NA other upstream 2286409 1063085 ~ 1116950 (+)
G147311 NA other upstream 2904848 449652 ~ 498511 (+)
AMCG00000032 NA other upstream 3148918 231336 ~ 254441 (+)
AMCG00000094 NA other downstream 274215 3690772 ~ 3699093 (+)
AMCG00000093 srp14,LOC106610862 other downstream 304428 3720985 ~ 3724316 (+)
G148040 NA other downstream 343622 3760179 ~ 3760624 (+)
AMCG00000113 NA other downstream 695563 4112120 ~ 4193033 (+)
AMCG00000136 btbd7 other downstream 1671882 5088439 ~ 5161195 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G240561 NA non-coding CI01000055 null 6657526 ~ 6657809 (+)
eurasian perch (Perca fluviatilis) G201478 lgmn,LOC102784085 non-coding NC_053131.1 CM020928.1 10378881 ~ 10385415 (+)