arid2 (arid2)


Basic Information

Item Value
gene id arid2
gene name arid2
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21376872 ~ 21429238 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU311091
TATTTTCACTTATTTATTATTGAAATGAATACCATTACAATTAATGAAAAAGAATCTTGTAAATATGTTGTGAATATATATAAAGAAGATCCTTTCATGCCGATGCAGCCACTGGAGAACTTGCTCTGTGGAGTAATAGAAGCATTACTTTGGTAGAATTGAATAAAGTAgtatgtttttctgttttgttgcttttttttttatgatcccTGGTCACTTGTATCTAATGTGATTCTATACTCAGCAGTGGATGAATGTACTTAAAAACCTGTAAATAATTCTGCAAAGGTACTGATGCTGTAAAGCTTAGGGAGGgggtaaaaacagttttttgtgGAACTGTGACATTTTTTGTATTATAATACCTTGTAGAACTCATTTTGCTGGCTGAAAGAGTATGGAATAATATATCTCATGTCATtttgtagaagaaaaaaaaaatattgaaggTATTCTCTTCCCTCCCCCTTCCCATCGCCCCtcaacacgcgcacacacacaagtaacaTATATCCACTGTAAGCGTTTTGTCATTGTACGGGCACAGTGCGCGTACCgaaatttttttgtatttgtaaatTGGTTTAAATACATGGAGTTTTTATACAGGTTTTCTCCTGTGTTCTTTGCTTTACGTGCAGGTATGATATTTTCTTCACTACTTTTTTCTATCTTAATATAGTGTGGAGTTTTATTGTACTATTTTTTCATTCTTAATACCATGCCACATTCCGGCTCACGTCCTCAGACTGTCCTCTCTACCGTGTGTTGTGTAACATTTATGATTGCCTGTCGTATTAGCATCTGACCGGGGCGACCCAACCATCCTCATTTCTGCGGTGTCAGTAGGATGTGTGACTATACATAGACCTAACAGTCTGTTAGAGATTGGCtttatttactttggtgactgtttatagtttttaaataaaacac
>XM_039791778.1
AGAGGGCGCTGCACGCATGGCAGGCTGGGCTCCGCGGCCTTCACATACATCTTTTTGTCTGAGAACTGATCCTCTGCCGCTCTACAGTGTGTGCGATAGCCTCGGAGCTGCGTCCGTAACACACTGTCAAACCACTCCAAACGAATACAACCGCGACCAAAAGCATTAATTCTACACATTCTGCCATGGCGTTTCTAATCTGCCGGTAAATCGTTTGTATTTCTGACTGTTCGTTGGAACTTAGTCCGGGGTTGAAACGGGCTTGCTTTCTGTGTGCATCAGTCTTTATTAGCGAGCTGCCGCTCTTCTTGCTATCAGCTATTTCTTTAACTTTTTAAACACTCAGCTTCGCGAATGACTGAGCGCCGGCGGAGTATGGGATCCTTGGTGTCTTAAGAAGCGACTGAAGTGGGGTTTAACCGTTTTTGCATGCAAAAACAATGGCAAATTCGACGGGGAAAAATCTACTAGATCAGCGAAGGAAAGGACAGGCTTTCCTGGACGAGCTGCGGCAATTTCACCAAAGCAGAGGATCGCCTTTCAGGAAGATTCCTATCGTGGGTGGGAAAGAGCTGGACCTGAATGCTCTCTATATCAGAGTCGTCTCTTTAGGTGGATTTGCTAAGGTCTCTGACAAAAACCAATGGATTGAACTTGGAGACGAGTTTAACTTTCCAAGGAGTTGTTCCAACGCTGCATTTGCTTTAAAACAGTACTACCTTCGATACTTGGAGAAGTATGAGAAAGTGCACCACTTCGGCGAGGATGATGAAGAAGCGCAGCCGGGGAATCCCAAAGCCTCTCTTCCAATCGGTGCAATTCCCAGCTCCTATAACTACCAGCAGCACATTGTATCAGACTATCTCCGCCAAAGCTATGGACTGTCTTTGGATTTCGTCCCGCCGTGTGACTACAACAAACTGGTGCTGTCTCTCCTTTCGGGGCTACCCAACGAAGTGGACTTTGCTGTTAACGTTTGCACACTGCTGTCCAACGAGAGCAAGCACGCCATGCAGCTGGACAAGGACCCCAAGCTGGTCACGTTGCTGCTGGCGCACGCCGGCGTCTTCGACGACTCGCTAGGCAGCTTCTCCGGGGTCTTCGGGACGGACTGGAAGGAACACACCTCCCGGGACTTCATCAGGTTCTGGAAGGAGGTGGTGGAGGACGTGGAAGTCAGGGAGCTGATCTGGGACAAGAACAGCCCGGCACAAGATGGTATGTCGTGCGAGGGGCGCTGGCAGAGCCTCTTCCACCCGCCGCGGAACTTGGGCATCAGCGACATGGAGGCCCAGCGGGTGCTGCAGATTGCCGTTATCCTGCGGAACCTCTCCTTCGAGGAGGCCAACGTCAAGCTGCTGGCGGCCAACCGAACGTGCCTGCGCTTCCTCTTGCTCTGTGCCCACTGTAACCTCATCTCACTCCGACAGCTCGGACTCGACACGTTGGGCAACGTGGCTGCCGAGCTCCAGCTGGATCCCGTTGACTTTCGGACAACTCATCTGATCTTTCACACCATCACCAAATGTTTGATGTCCAGGGACCGGTTTCTCAAAATGAGAGCCATGGAAATCCTGGGCAACCTCAGCAAGGCGGAGGACAACGGCGTGCTGATCTGTGAGTACGTGGACCAGGACTCGTACAGGGAGGTAATAATGCTGCTCACCCTGCCGGACCTCATGCTCCTCATGGCCTCTCTGGAGGTGCTGTACCTGCTGGCCCAGCTCGGAGACATCCCCTGCAGCAAGATCGCCTCCGTCGACCATAGCATAGACCTGTTAGTGCGATTAGTATCGGTGGACCTCCATACGTTTGGACCCGACGCCCTGACAGCGGTGCGATTGATCGAGCATCAGGCCAATGCCGAGCAGGCGGCAGAGGTCCGGCCACAGCTGGTGGAGCAGGTGCCTGCAGCCGCGCAGGGAGCAGCAGCGCCTGTAACGAGGGTCCCAGTTCAATCCACTCCACCGCCACCTGGTATCGTTGAGCTCGATGGGGAAAAATTTACACTGCAGTGGCTGAACGCACACTTTGAGACAAACCCCGAGGGCTCGGTGCCGCGATCAGACATTTACTCCGAGTACTTGGCCACGTGCAGTAAAATGGGACGAAGCAACATCTTGAACTCCACCGGCTTCCTCAAGTGTCTGCGGACTGTGTTTCCCAACCACACAATGAGGCGGCAAGAGGAGACCAAGGCCACCGGTCAGCTTCAGATTCTCCTGGTAGGGCTGAGGCGCAGGTCGATCCCCCTGCCCATCCAGCTGTACTACCAGCAGCCTCAGCAGCAGAATCCGGCAGCTGCTCCAACGCCTCCAGCAGCCCCCGGAGACCCCCAGGCCCTGCCTCCAGGCTTACCTCTTGGGCCTCCCAGCCTTGGAGCCCAGTTTGTCAGGGCCCTGGGCCCCAGCCTCAGCACCCCCGGCGCCGCCCCATCCATGGCCTTGACTGCACAGGAGCCTCCTCATGAAAGCCACCCGACTGTTTCCCGACACCTGGTGTCCCCGCAGTTGCCGCCGAATCCTCTGGCGgcggtgcagcagcagcagatccGACCTGGTCCAGTGGTCCAGATTCCGACGTCGGCACCGGCCGCCCAGAACCACAGCCCCCAGAACCCCGGCGCTCCTCCTGCAGCTCGGCAACACTCCCCGATGCTCCCCACGGGGACGCCCGTCACGCTATTTCAGCAGGTACCGCAGGGCCACATTCTCACCGCCAGGGTGCAAGGCGTGTGCCCTCCGATCACCCAGCACCCGGCCCTGCCTCAAACCCCTCTCCTGTCTGGGCCTCAGGGTGACGCTCCCCAGGCGGAGCCCCGGTGTGTTGCTGGGACCTCGACCCCCTCTTCTTCCATCCAGGTGGGGGCCGGTCAGGCGTTTAGTATCGCCGGCGTGCCCAATAACCAGGGCTCACGCGTTACATTTCAGAATATCGCCCCCAAACCAGCACCAAGCCAGTCAGGTGGACCAGCAGCCACGATAGCCACTCCCAACCAGCAGCCTCAACAGCAGGCGCAGAGTGTCGTAATAGTTGGCCCCGACCCCCAGCAGAGCCCAGCCTACACCCCTGCCATACACCAGATCGTTCTCGCCAACCCTTCCGCCCTTCCCGGTGCCCAGACTATCCAGATAACAGGGCAGCCCGGAGCTGCTTCCAGCCCCTGGCCGCCCCCTGCTTGTCACTCCAACACCCATCCCAATCAAACTGTCAGCCACGCACTGTCCATGAAACCCCATCAACAGCAGCCGCATCAACAGCCGCAGCTCCAGTTTATTTCCCCAAACCCCCCCTCTCAGCCTACCTCCACCGAGTCCAGCTTGATCAAACAGCTACTGCTTCCAAAGCGAGGGCCTTCTACTCCGGGAGGGAAGCTCATCCTGCCCGCTCCACAGGTGCCCCCTCCCAACAGCACGATAGCCCCAGGTCCGCAGGTCATCTACCAGACGAGCTACAGCACCCAGAATCCCTCTCCTCAGCCTCAGCAGCTCAATGTCCAGCTGGTTCCTGGTCAGCTTCCTGCTGCGGGAGCCCCAGCCCTCCAGACGGTCCAGCTCTTGCCCGGCCAGCTCATTTCCACGAGTAGCCCCGGGGCGGCTACCATCATCCAGGGCCCCACGGCGGCCGGACAGGTCACGTTCACCGTGGTCCCCAACACTGGCTTCACCTCGACCGCCGCGGTCGCCGCCGTCAGCCAGGGCGCCGTGGCCACGGGAGTGCCCCCACCTCCGTTCTCTGCCGCGACGGTGGCTCACCACGCCCCGGCCACTCCGCCGCCGGCGCCCCTCAGAGGAGACAAGATCATTTgtcagaaggaggaggaggccaAGGACGCCACGGGGCTGCACATCCATGAGCGGAAGATCGAGGTAATGGAGAACTCGTCGTTGGCGGAAGGCGACTCCAACGGCAAAACCAGCAACGGCGACGTCGCGGCAGGTGCCAAGCTGCTAAACGGTCGGAAGTGCATGGAGTCGAATCTACCTCCATACCACTCAGGGAACAGCCAGGGGGTGCTCAACGGCCCTGCCACGGAGGGCCACCCTGCTAACGGGAAGCAGGCCctctcccccacccccaacgCCCCTCTGGAGGGCAACCCCGACCCCAAAAAGACTCTAGTCAACGGGGTGTGTGACTTTGATCGGGGTGACGGTGGTGgcaacataaacaaaaacattccAAATCACATTGCTTCCAAACAGTACTTGGGGAACGGGGAGGTGGGCCCCTCAGAGAAGAGTCACGGGTCAGACCCCCCTCTTCCTAGTCCTCCTCCCCCCCAGCAGGACACTGCCAAAGCCCAGCAGGCCGAGCGCCTGGCTAACGGACCCCAGGCAGCAGGCAACCGGCCTCCCTCGGAATTAACCAATGGACCTTTGGGGCCGGGCCACGCCGCGCACGTGCTAAGACAGCAACTGCTCCCCAATTCCACCCTCCCCTCCACCGTTGGCGCTACCTCCCCGAGTCCCGCCGCCCCTCCCGCGAACGGAGTGGCCTCCGAGGCTCGAGGTCTCAAGAGACCAGCCGATAGCGAGGACCGCAGCGCGGCGTCCTCGGGGATCCCCAATAAAGTGGGCGTGCGCATCATCACCATCAGTGACCCCAACAACGCCGGCAGCAGTGCCACCATGGTGGCGGTGCCCGCAGGAACAGACCCAAGCACAGTAGCCAAAGTAGCAATAGAGAGCGCCACTCAGCAGAGGAACTGCTCGCCCGCACTGGCAGCTGGCTCAACGCCTACGTCTACCCCGCCCCCTGTATCCCAGCCTGCTCCGGGGGGtaaccacagcccccacctctCAGCACAGCAAACCCCCGCAGCACCGCCAGAGCAGAGCAGGAAAGCAGGGCAGAACTTCAAGTGTCTGTGGCAGTCCTGTAAACGGTGGTTCGAAACGCCGTCGCGGGTGTTTTACCACGCGGCGACGCAACACGGCGGAAAAGGCGTATACGGTGGCCACTGTCAATGGGAGGGATGTGAACCCTTCCCCCGGCAGAGACTGTCCTTCATCACGCATCTACAGGATAAGCACTGTTCTCGAGAGGCTTTGCTGGCTGGACTCAAACTAGAGGAGCAGCAGGCGCAAAGTCCCAATCAGACTTCTTCCCAGACTCCGCCAGCGGCAGGCAGTTCTCAGACACCGCGAGCACCCAAAGCAATCGTGAATCATCCGAGCGCAGCTCTCATGGCCCTCCGCAGAGGCTCTCGAAACCTGGTCTTCAGGGACTTCACTGATGAGAAAGAGGGACCAGTGACCAAACACATACGACTAACTGCTGCCTTAACGTTAAAGAACATCGCCAAGCACTCGGACTGTGGTCGCATGTTGGTAAAGAGGCATGAGACGCACCTGTCTGTGCTCGCGCTAAGTAACATGGAGGTTTCCACCACGCTCGCCAAATGCCTTTATGAACTGACGCGCTCGCTCCAGGCTTAACGCCAAAAGGACAAGCTCTACAACCCCCCCGGTGAGCCGTTGCGGGTGTGCAGGGGGAGCAGAGGGTGGGAACCGGACCGAAGACCCTCCTTCTGCCGCGCCTGGCACCCTCCAACCCCCTCTCATCCCTCACCACCTTCCTCGCCAACGTGTGTTCAAAACCCTGCCCTcccccatccacacacacacacacacacacacacacactcactcaaaaGAAACTGCCACGGGGTCTTCCACCAGCTGCCCACCAGGGGAAGCTCTTTAAGACTGCTTCCCTGAGGGACTCCACAAAACCCCAAACAGAGCACATTttgtttaagttttttttttttttttattatttgtatttttttttttttcctcttcgtCCCGTGAACTGATGTGTGCGTTGGAGTGAGTGGCGGTCGACTGAAGAGTACAGAAGGGCAGGGAGGGGGTGCGGGCTATTGTAGGTGTCCCACAGGGTCGGGTGGAGGAGGACTCAGCTGGCAACTGGCGCagatactatttttttttttttttttttttttttttttttaagaaacttGGTAGCTTGGTTTTCTTACTTGAGTCAATATATTTTCACTTATTTATTATTGAAATGAATACCATTACAATTAATGAAAAAGAATCTTGTAAATATGTTGTGAATATATATAAAGAAGATCCTTTCATGCCGATGCAGCCACTGGAGAACTTGCTCTGTGGAGTAATAGAAGCATTACTTTGGTAGAATTGAATAAAGTAgtatgtttttctgttttgttgcttttttttttatgatcccTGGTCACTTGTATCTAATGTGATTCTATACTCAGCAGTGGATGAATGTACTTAAAAACCTGTAAATAATTCTGCAAAGGTACTGATGCTGTAAAGCTTAGGGAGGgggtaaaaacagttttttgtgGAACTGTGACATTTTTTGTATTATAATACCTTGTAGAACTCATTTTGCTGGCTGAAAGAGTATGGAATAATATATCTCATGTCATtttgtagaa

Function

symbol description
arid2 Predicted to enable DNA binding activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 6. Orthologous to human ARID2 (AT-rich interaction domain 2).

NR:

description
PREDICTED: AT-rich interactive domain-containing protein 2 isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG:

id description
K11765 ARID2; AT-rich interactive domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
TU311091 False 936 lncRNA 0.35 1 21428303 21429238
XM_039791778.1 True 6451 mRNA 0.57 21 21376872 21428732

Neighbor

gene id symbol gene type direction distance location
tm7sf3 tm7sf3,LOC108229002 coding upstream 50590 21305614 ~ 21326282 (+)
fgfr1op2 fgfr1op2 coding upstream 71950 21301420 ~ 21304922 (+)
zgc:162331 LOC104922672,LOC101475914,LOC102301200,LOC102199861,LOC102799838,LOC101071909,LOC104956107,LOC100698522 coding upstream 157646 21183886 ~ 21219226 (+)
LOC120553657 LOC103369066 coding upstream 317790 21047937 ~ 21059082 (+)
LOC120553788 NA coding upstream 470051 20897219 ~ 20906821 (+)
scaf11 NA coding downstream 4343 21433581 ~ 21452526 (+)
trnal-caa_25 NA coding downstream 150075 21579313 ~ 21579423 (+)
trnal-caa_26 NA coding downstream 150666 21579904 ~ 21580014 (+)
trnal-caa_27 NA coding downstream 151014 21580252 ~ 21580362 (+)
trnal-caa_28 NA coding downstream 151259 21580497 ~ 21580607 (+)
G229264 NA non-coding upstream 105761 21265412 ~ 21271111 (+)
G229263 NA non-coding upstream 112173 21264396 ~ 21264699 (+)
G229233 NA non-coding upstream 156060 21220448 ~ 21220812 (+)
G229205 NA non-coding upstream 314437 21037948 ~ 21062435 (+)
G229182 NA non-coding upstream 451813 20923948 ~ 20925059 (+)
G229352 NA non-coding downstream 74406 21503644 ~ 21613229 (+)
G229381 NA non-coding downstream 190735 21619973 ~ 21620222 (+)
G229386 NA non-coding downstream 207859 21637097 ~ 21637359 (+)
G229395 NA non-coding downstream 236960 21666198 ~ 21666434 (+)
G229396 NA non-coding downstream 238475 21667713 ~ 21667988 (+)
LOC120553023 LOC106946322,LOC103151516,LOC104922640 other upstream 226521 21148267 ~ 21150351 (+)
ucmaa NA other upstream 985466 20382393 ~ 20391406 (+)
LOC120553418 NA other upstream 1151687 20190928 ~ 20225185 (+)
LOC120553749 NA other upstream 1203465 20147078 ~ 20173407 (+)
G228924 NA other upstream 1391224 19982248 ~ 19985648 (+)
G229423 NA other downstream 408684 21837922 ~ 21847020 (+)
G229425 NA other downstream 419973 21849211 ~ 21850601 (+)
G229422 NA other downstream 428745 21857983 ~ 21859209 (+)
G229428 NA other downstream 437963 21867201 ~ 21868297 (+)
phlda1 phlda1 other downstream 1310479 22739717 ~ 22743179 (+)

Expression


Co-expression Network