phlda1 (phlda1)


Basic Information

Item Value
gene id phlda1
gene name phlda1
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 22739717 ~ 22743179 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792334.1
GACAGGCAGCCTCCTCACTACAACCAACAGTACTCACACCACCGCagtcagagcagcagctcatGCCCCCGCCTGCTCCGGGATAGACATCCGCCCGTCCGTCCACTGAAGCAGCCAGGGAGCTGCAAGCGTCCGGGTGAAGATGCTGGAAAACGGGAGGAAGGTGTTCAAGGAGGGTCTGCTGGAGAAGCGAAGCGACGGGCTGCTGCAGCTCTGGAAGAAGAAGCACTGCGTCCTGACCGAGGACGgcgtgctgctgctgccgcccaAGCAGCACGACCAGCCGCAGCACGGCGGCGGGGACACGGGCAAAGTCAAGGAGCTGCACTTCGCCAACATGAAGACGGTGGACTGCGTGGAACGGAAGGGCAAGTACGTCTACTTCACGGTGGTCATGCTGGAAGGGAAGGAGATCGACTTCAGGTGCCCGCAGGACGAGGGCTGGAACGCGGAGATCACCCTGCAGATGGTCCAGTACAAGAACCGGCAGGCGATCCTGGCCGTCAAGTCCACCCGGCAGAAGCAGCAGCTGCTTGTCGTGCAGATGCCCGGTCAGAAGACGGTCCGCAGCTCGCCGAACGTTGCGTGACCTGCGGCGAGTCCCGCGGACACTGGTGCACCATTGTTAGCGGTCACAGTGCTCCCTCACAGATCGAACCCTGAGCGAATATGCTGGCAGAAGGGGACGAAATCGTGCAAAATGTGGATTTACTTTGGCGTAAAGAAAACTTTGGGAGTCTCTGCTGTAGGCCTCCGCCGGAAAATGTGCTGGATAAATCCATTACCAGACAGGTTTGATATTTCATACAAGGAGGGCTTCTCCTTATCCATTACGTCTGGCGTTACGCGCGGAGATAAAGAGATTTAAATTGCGCACGCCGCGTAATTACTCAATAAAGGAAAGATGATCAATTGTTTATATAAcccatttaaaatttaaatttccATGAGCGAATGACTGTTGGAACATGTTCAAGTCCACAATGTAAAACATTCTAAACCTAAAATATGCCACAGTGATTCTAAGCGTAATGACGCACAAATTGCGCGCAAAAAGCAAAAGGCCACATCAGACCCAAGTGTATGGAGCATCACAGTCCTACTACACACCACAGCAGCTCATCTCACTCAAACTCGCGTTATCAGTCGGATAAGCTGCTTTGTGTCTGCTAGGACAACACATTTCCATGCACATGGCTCTCTGTGGCACATGGTGATTTGGTGGACACACTGAGGTTTCAACCCAGCCAAACATCAATGGACCAAACATCCGGAAACAATGTGGACACGTTATTATTCTGTCATTGTGATACAATGTTGGAAATGGGGGTCCTGCAAAGGCTTTGAGTTGAAGGGAGACAGTGTGACATG
>XM_039792335.1
GACAGGCAGCCTCCTCACTACAACCAACAGTACTCACACCACCGCagtcagagcagcagctcatGCCCCCGCCTGCTCCGGGATAGACATCCGCCCGTCCGTCCACTGAAGCAGCCAGGGAGCTGCAAGCGTCCGGGTGAAGATGCTGGAAAACGGGAGGAAGGTGTTCAAGGAGGGTCTGCTGGAGAAGCGAAGCGACGGGCTGCTGCAGCTCTGGAAGAAGAAGCACTGCGTCCTGACCGAGGACGgcgtgctgctgctgccgcccaAGCAGCACGACCAGCCGCAGCACGGCGGCGGGGACACGGGCAAAGTCAAGGAGCTGCACTTCGCCAACATGAAGACGGTGGACTGCGTGGAACGGAAGGGCAAGTACGTCTACTTCACGGTGGTCATGCTGGAAGGGAAGGAGATCGACTTCAGGTGCCCGCAGGACGAGGGCTGGAACGCGGAGATCACCCTGCAGATGGTCCAGTACAAGAACCGGCAGGCGATCCTGGCCGTCAAGTCCACCCGGCAGAAGCAGCAGCTGCTTGTCGTGCAGATGCCCGGTCAGAAGACGGTCCGCAGCTCGCCGAACGTTGCGTGACCTGCGGCGAGTCCCGCGGACACTGGTGCACCATTGTTAGCGGTTAATTGGACACTCAGCTGGAGGATGAATATCTCCCCCTGCTGCTTCACCACAGACCTCCATTCTCCAGCAGAACCCCTCTTCCACACAGACCAGCTTCCTCTTTTCAATACAGAGACTTATTTCACAAAAGACTGATGGACAAAAAGCATGTGAGAAGACAACTGTACTCTACCGTGCGATGGTTATCCCTTATTTATtagatgtatatatattttctataaaaaaaaaatactatgttGTTGATGAATGTTCCCGTGTGTTTGTTGCTAGAGTGGAACAAGAAATCCTCGCTCGGAGGTTCCCTagaccacatgttacacacaaagTCCATAGGGTATAAGCTCACATATCTTAGGATGGTTGCTGTAGGTTAGTCAGATCACTTCCTTACCGCTAACATTTGTGTCATTGTCCTTGTTTTTCAACTGAACCAAAgaatcattacattacattttctttctcgTGCAGTGTTACAGCTCAGAATATACTATAGCCTACTAAAATACTATATGATGAGACACCTGCATGATGCTattttgtttgcatgtgttgcACCTACTTTTATTCAGCCCTGCTTTTTCAGAGTTAGTATAACTGCTGCACAAAAGAGGCAATGTTTGCAGACAGTATAAGACAGTCAATGGTACACATAGGTCTCTTGAATAAACAGGTTATACTGTTCTAAATTTTTTACTTACTGCAATGTAGCTAATGTGCTAACTAGCTTGCTTAATGTTATTGTAAGTAAGCTACTGTGTTAACGAGCTTGCATAACGTTATtgtaagttagctagctactgtgCTAACGAGCTTGCTTACTGTAAGTTAGCTGCTGTGCTAACTAGCATAGTTACTTTTACTTAGCTACTCAGCTAATTATCTTACTTACTGTAAATTAGCAACTGTCCTAACTAGCTTACTTACTGTATGTTAGCTACTGTGATAGTTTGCTTACTGTAAGGTAGCTACAGTGCTAACTGACTTGCTTACTGTAAGTTAGGTACTGTGCTAAAGAGATGGCTTACTGTAAGTTGGATACTTTGCTAACTAGCTTGCTTACTGTAAGTGAGCTGCTGTGCTAGCTACGAAGGGtgtgttccatttgtactcagaAGTCGGAAATTCCGAGTTCTAATT
>XR_005638197.1
GACAGGCAGCCTCCTCACTACAACCAACAGTACTCACACCACCGCagtcagagcagcagctcatGCCCCCGCCTGCTCCGGGATAGACATCCGCCCGTCCGTCCACTGAAGCAGCCAGGGAGCTGCAAGCGTCCGGGTGAAGATGCTGGAAAACGGGAGGAAGGTGTTCAAGGAGGGTCTGCTGGAGAAGCGAAGCGACGGGCTGCTGCAGCTCTGGAAGAAGAAGCACTGCGTCCTGACCGAGGACGgcgtgctgctgctgccgcccaAGCAGCACGACCAGCCGCAGCACGGCGGCGGGGACACGGGCAAAGTCAAGGAGCTGCACTTCGCCAACATGAAGACGGTGGACTGCGTGGAACGGAAGGGCAAGTACGTCTACTTCACGGTGGTCATGCTGGAAGGGAAGGAGATCGACTTCAGGTGCCCGCAGGACGAGGGCTGGAACGCGGAGATCACCCTGCAGATGGTCCAGTACAAGAACCGGCAGGCGATCCTGGCCGTCAAGTCCACCCGGCAGAAGCAGCAGCTGCTTGTCGTGCAGATGCCCGGTCAGAAGACGGTCCGCAGCTCGCCGAACGTTGCGTGACCTGCGGCGAGTCCCGCGGACACTGGTGCACCATTGTTAGCGGTAAGACAGCTCCAGAGAACGCGAGATTgaaggggagggggtgggggtcgGCGGGCTCCCCAGGTCTGGGGATCCCCTGGCAAATTAAGGACCCATGTTTCGGTTTTTGTTTGATTCCCTGGATATTTGTGCTATGATGAGGACTTCTGTTTTCATCATAGGTCACAGTGCTCCCTCACAGATCGAACCCTGAGCGAATATGCTGGCAGAAGGGGACGAAATCGTGCAAAATGTGGATTTACTTTGGCGTAAAGAAAACTTTGGGAGTCTCTGCTGTAGGCCTCCGCCGGAAAATGTGCTGGATAAATCCATTACCAGACAGGTTAATTGGACACTCAGCTGGAGGATGAATATCTCCCCCTGCTGCTTCACCACAGACCTCCATTCTCCAGCAGAACCCCTCTTCCACACAGACCAGCTTCCTCTTTTCAATACAGAGACTTATTTCACAAAAGACTGATGGACAAAAAGCATGTGAGAAGACAACTGTACTCTACCGTGCGATGGTTATCCCTTATTTATtagatgtatatatattttctataaaaaaaaaatactatgttGTTGATGAATGTTCCCGTGTGTTTGTTGCTAGAGTGGAACAAGAAATCCTCGCTCGGAGGTTCCCTagaccacatgttacacacaaagTCCATAGGGTATAAGCTCACATATCTTAGGATGGTTGCTGTAGGTTAGTCAGATCACTTCCTTACCGCTAACATTTGTGTCATTGTCCTTGTTTTTCAACTGAACCAAAgaatcattacattacattttctttctcgTGCAGTGTTACAGCTCAGAATATACTATAGCCTACTAAAATACTATATGATGAGACACCTGCATGATGCTattttgtttgcatgtgttgcACCTACTTTTATTCAGCCCTGCTTTTTCAGAGTTAGTATAACTGCTGCACAAAAGAGGCAATGTTTGCAGACAGTATAAGACAGTCAATGGTACACATAGGTCTCTTGAATAAACAGGTTATACTGTTCTAAATTTTTTACTTACTGCAATGTAGCTAATGTGCTAACTAGCTTGCTTAATGTTATTGTAAGTAAGCTACTGTGTTAACGAGCTTGCATAACGTTATtgtaagttagctagctactgtgCTAACGAGCTTGCTTACTGTAAGTTAGCTGCTGTGCTAACTAGCATAGTTACTTTTACTTAGCTACTCAGCTAATTATCTTACTTACTGTAAATTAGCAACTGTCCTAACTAGCTTACTTACTGTATGTTAGCTACTGTGATAGTTTGCTTACTGTAAGGTAGCTACAGTGCTAACTGACTTGCTTACTGTAAGTTAGGTACTGTGCTAAAGAGATGGCTTACTGTAAGTTGGATACTTTGCTAACTAGCTTGCTTACTGTAAGTGAGCTGCTGTGCTAGCTACGAAGGGtgtgttccatttgtactcagaAGTCGGAAATTCCGAGTTCTAATT

Function

symbol description
phlda1 Predicted to enable phosphatidylinositol phosphate binding activity. Predicted to be involved in positive regulation of apoptotic process. Predicted to be located in cytoplasm. Is expressed in several structures, including basal plate midbrain region; hindbrain neural plate; nervous system; neural crest; and pronephric duct. Orthologous to human PHLDA1 (pleckstrin homology like domain family A member 1).

NR:

description
PREDICTED: pleckstrin homology-like domain family A member 1

GO: NA

KEGG:

id description
K23793 PHLDA; pleckstrin homology-like domain family A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792334.1 False 1371 mRNA 0.53 2 22739717 22741248
XM_039792335.1 False 1771 mRNA 0.47 2 22739717 22743179
XR_005638197.1 True 2093 transcript 0.48 2 22739717 22743179

Neighbor

gene id symbol gene type direction distance location
nap1l1 nap1l1,LOC102799271 coding upstream 1701 22715428 ~ 22738016 (+)
osbpl8 osbpl8 coding upstream 64523 22574823 ~ 22675194 (+)
csrp2 csrp2,LOC107383140,LOC107087065 coding upstream 205602 22514966 ~ 22534115 (+)
e2f7 NA coding upstream 233514 22493378 ~ 22506203 (+)
LOC120553804 osgep,LOC102796710 coding upstream 811307 21894940 ~ 21928410 (+)
LOC120553032 NA coding downstream 149634 22892813 ~ 22917577 (+)
LOC120553035 NA coding downstream 213525 22956704 ~ 22966965 (+)
LOC120553757 NA coding downstream 278236 23021415 ~ 23048594 (+)
krr1 krr1 coding downstream 449547 23192726 ~ 23206478 (+)
ccdc107 NA coding downstream 546399 23289578 ~ 23299318 (+)
G229559 NA non-coding upstream 385329 22354115 ~ 22354388 (+)
G229494 NA non-coding upstream 413460 22325795 ~ 22326257 (+)
G229493 NA non-coding upstream 419189 22320266 ~ 22320528 (+)
G229491 NA non-coding upstream 445957 22293497 ~ 22293760 (+)
G229485 NA non-coding upstream 608321 22129026 ~ 22131396 (+)
LOC120553177 NA non-coding downstream 22922 22766101 ~ 22771633 (+)
G229621 NA non-coding downstream 89771 22832950 ~ 22833161 (+)
LOC120553039 NA non-coding downstream 233294 22976473 ~ 22994911 (+)
G229645 NA non-coding downstream 285660 23028839 ~ 23037327 (+)
G229659 NA non-coding downstream 361001 23104180 ~ 23186555 (+)
G229428 NA other upstream 871420 21867201 ~ 21868297 (+)
G229422 NA other upstream 880508 21857983 ~ 21859209 (+)
G229425 NA other upstream 889116 21849211 ~ 21850601 (+)
G229423 NA other upstream 892697 21837922 ~ 21847020 (+)
arid2 arid2 other upstream 1310479 21376872 ~ 21429238 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other downstream 572242 23315421 ~ 23440663 (+)
adm2a NA other downstream 1089839 23833018 ~ 23848624 (+)
LOC120553686 LOC105929833,LOC107382334 other downstream 1191121 23934300 ~ 23945640 (+)
LOC120553083 NA other downstream 1566363 24309542 ~ 24314707 (+)
G230148 LOC102781993,LOC101465723 other downstream 1877633 24620812 ~ 24778258 (+)

Expression


Co-expression Network