LOC120553804 (osgep,LOC102796710)


Basic Information

Item Value
gene id LOC120553804
gene name osgep,LOC102796710
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 21894940 ~ 21928410 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792519.1
TTCAAATAGAGTGTGAGCTGCAGAGGTTTGCTGCATGTTAACATACAGAACATTACTACTTGACGTGTGTACAATTATTAGTTCAAAAGTCGAACTGGCACGAATTTGAATTAATGTGAACCACCAAAGGAAAGCGAAAAGTTAGctgcCATGACTGTAGTAATTGGATTTGAGGGCAGTGCCAATAAGATCGGCATCGGAATCATCAGGGATGGCGAAGTGCTTTCCAACCCGAGACGGACCTACATTACCCCCCCTGGTCAAGGCTTCATGCCGAGTGACACCGCCAGGCACCACCGTGCTGTCATACTGACTGTCCTGAAGGAGGCGCTGGAGCAAGCAGGGCTGAAGCCTGCAGACATCGACTGTGTGGCATACACAAAAGGTCCTGGTATGGGTGCTCCTCTGGTAACGGTGGCTCTCGTGGCTCGTACAGTCGCACAGCTTTGGGGGAAGCCGCTCCTCGGCGTCAACCACTGCATTGGACACATTGAGATGGGCCGACTCATCACACAAGCTGACAACCCTACCGTGCTTTATGTCAGTGGAGGGAACACGCAGGTTATTGCATACTCAGAGCGGCGGTACAGAATATTTGGGGAGACCATCGACATTGCAGTTGGCAACTGTCTGGACAGGTTCGCTAGAGTTATAAAGATTTCCAATGACCCCAGTCCAGGCTACAACATAGAGCAGATGGCCAAAAAAGGGAGTCAGTATGTGGAGCTGCCATATACAGTAAAGAAGGATGTCTCATTCTCTGGGATCTTATCCTATATTGAGGAAGCGTCTCATAAGATGCTAAGCTCGGGTCAGTGTGCAGCAGAGGACCTATGTTTCTCCCTGCAGGAGACTGTGTTCTCCATGCTGGTGGAGATCACGGAGAGGGCCATGGCTCACTGTGGCTCCAAAGAGGTCCTTATCGTTGGGGGTGTTGGCTGCAACCTGCGTCTGCAGGAGATGATGGGGGTGATGTGTAAGGAGAGAGGAGCCAAGCTGTTTGCCACAGATGAACGGTTCTGCATAGACAACGGAGCAATGATTGCTCAAGCTGGCTGGGAGATGTTTAGGTCCGGTCAGGTGACGGAGCTGGAAGACTCATGGATTACACAAAGGTACAGAACAGATGAAGTGGAGGTGACATGGAGAGACTGATGGAATAACATATTGGTGCTACATATGTTGTTGCAGCAGGTCTGTTATGACGATGGGACAAATTCTTCTGGTTGCGGTGGTGGACTACCATAGTTCCCCATAGTAACTGTTCCCCTGAAACAAAGCTGAGGTCAGGTTTACAATGCAACTCTGACACTTCATTAACATGTACACCCAGTGCAGCTTCTCCCTACAAAAATTTCTGGCACTTTAATTTGGTGTTTAACTGTTGTACTTTGTAACTGTCAGGAAGGGAAACGTGATTTAACTGTACAGCAGTAAaactacaaattaaaaaaagattaagaTGGAACATGTCaagtttattcattttattaagCAATACTGTTCACTTAcattcctcctctttctccagtgtaaattttatttattcaatacattttctttcaaaaaTCAACATACTGAACATGGTGAGATTCCTTATGGATTCATGAGTAACATTCACCCGATTAGGAAACCAAATAAAAA

Function

symbol description
osgep Predicted to enable N(6)-L-threonylcarbamoyladenine synthase activity and metal ion binding activity. Predicted to be involved in tRNA threonylcarbamoyladenosine modification. Predicted to act upstream of or within tRNA processing. Predicted to be located in nucleus. Predicted to be part of EKC/KEOPS complex. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in Galloway-Mowat syndrome 3. Orthologous to human OSGEP (O-sialoglycoprotein endopeptidase).

NR:

description
PREDICTED: probable tRNA N6-adenosine threonylcarbamoyltransferase

GO: NA

KEGG:

id description
K01409 KAE1, tsaD, QRI7; N6-L-threonylcarbamoyladenine synthase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792519.1 True 1644 mRNA 0.46 13 21894940 21928410

Neighbor

gene id symbol gene type direction distance location
LOC120553802 LOC104922677 coding upstream 4367 21878278 ~ 21890573 (+)
LOC120553094 NA coding upstream 17670 21870583 ~ 21877270 (+)
LOC120553088 NA coding upstream 93268 21766907 ~ 21801672 (+)
LOC120553089 NA coding upstream 128423 21757653 ~ 21766517 (+)
LOC120553001 NA coding upstream 264496 21624502 ~ 21630444 (+)
e2f7 NA coding downstream 564968 22493378 ~ 22506203 (+)
csrp2 csrp2,LOC107383140,LOC107087065 coding downstream 586556 22514966 ~ 22534115 (+)
osbpl8 osbpl8 coding downstream 646413 22574823 ~ 22675194 (+)
nap1l1 nap1l1,LOC102799271 coding downstream 787018 22715428 ~ 22738016 (+)
LOC120553032 NA coding downstream 964403 22892813 ~ 22917577 (+)
G229431 NA non-coding upstream 28620 21853196 ~ 21866320 (+)
G229450 LOC107081058 non-coding upstream 61143 21829015 ~ 21833797 (+)
G229432 NA non-coding upstream 126911 21767353 ~ 21768029 (+)
G229399 NA non-coding upstream 211456 21682619 ~ 21683484 (+)
G229396 NA non-coding upstream 226952 21667713 ~ 21667988 (+)
G229481 NA non-coding downstream 123598 22052008 ~ 22098446 (+)
G229485 NA non-coding downstream 200616 22129026 ~ 22131396 (+)
G229491 NA non-coding downstream 365087 22293497 ~ 22293760 (+)
G229493 NA non-coding downstream 391856 22320266 ~ 22320528 (+)
G229494 NA non-coding downstream 397385 22325795 ~ 22326257 (+)
G229428 NA other upstream 26643 21867201 ~ 21868297 (+)
G229422 NA other upstream 35731 21857983 ~ 21859209 (+)
G229425 NA other upstream 44339 21849211 ~ 21850601 (+)
G229423 NA other upstream 47920 21837922 ~ 21847020 (+)
arid2 arid2 other upstream 465702 21376872 ~ 21429238 (+)
phlda1 phlda1 other downstream 811307 22739717 ~ 22743179 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other downstream 1387011 23315421 ~ 23440663 (+)
adm2a NA other downstream 1904608 23833018 ~ 23848624 (+)
LOC120553686 LOC105929833,LOC107382334 other downstream 2005890 23934300 ~ 23945640 (+)
LOC120553083 NA other downstream 2381132 24309542 ~ 24314707 (+)

Expression


Co-expression Network