chst11 (chst11)


Basic Information

Item Value
gene id chst11
gene name chst11
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24384898 ~ 24478763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792239.1
acagagcgagcagcagcagcctccaGCCCCCCCGTCCCGAAATGAAACAGACCCTTAGCGAACTGATGAGGATGAGCCGGATATGCCGGATGATATTTGCCACTTGTTTGGGATCCTTTATTCTGGTCATCTTTTATTTCCAAAGTATGTTCCAACCAGTCATGCGGAGGAACCCCTTCGTGGTGGACGGCTGCTGTAGGAAAGggtcccgcaacgccctgcagGAGCTCTACAACCCCACACAGCCGGAGTTGTCTGGAGCAGCCGTCCTCCACCAGTCCAGGAGGGATCAGGTAGTGGATGCCTGTCGCGTCTACAGCGCGTCCAGCCGTAAGCGCAGAGTCCTGACCCCCGGAGACCTCAAACACCTTGTGGTGGACGAGGACCACGAGCTCATCTACTGCTACGTCCCCAAGGTGGCCTGCACCAACTGGAAACGCGTCATGATGGTGCTCACGGGCCGGGGCAAATACAGTGACCCAATGGATATCCCTTCCAATGAAGCCCACATTCCTTCCAACCTGAAGACGCTAAACCAGTACAGTATTGCTGAGATCAACCACCGCCTCAAGAACTACCTCAAGTTCCTGTTTGTTCGCGAGCCCTTCGAGAGGCTGGTCTCGGCATATCGAAACAAGTTCACCCTCAAGTACAACTCGTCCTTCCACAAGCGTTTCGGCACCCGCATCATCCGCCGCTACCGCAAGAACGCCACGCAGGACGCCCTGCTCAACGGTGCTGATGTCAAATTCAAAGAGTTCGCTGAGTACTTGGTGGACCCGGCCACGCAGCGTGACGGCCCACTCAACGAGCACTGGCAGACCGTCTACCAGCTTTGTCACCCATGTCACATCCACTACGACCTAGTGGGCAAGTATGACACGCTGGAAGAAGACGCTAACTATGTGTTGCGGCTGGTGGGTGTTGGCGACTCCTTGCGCTTCCCGAGCTATGCCAAGTCCACTCGTACCACAGATGCCATGACGGCCCAGTTCTTCAGCAATATCAGCACTCAGCAGCAGATCCAACTCTACCAGCTTTACAAGTTGGACTTCCACATGTTCAACTACACCACACCCAGCTACCTCCGGCTGGACTAATGGAGGACGGGGCTGggactctaagaatgaatgccTTGTTTACAGAGAGGCAACAAAATGAGTGGATTTTTTTGAGGCAAACTTGAtttattaattttgttttttttaaactgtcgtCGTAACTTACAGGCGTGGGGGTCGGAATTAGACATATAGATAGgtgctgaaagaaagaaaggtaaTGCGTGCTTGTCTGGGCATAAGGGGGAGGATGAACAATCAACTCTGTGATACAGGGAGCACTGATTGGATAAGAATGTGAGCTAAATGGACCAAATGCATGCAAAGACTAAAATGTGTGGGTGAAGCAGGTCTTCAAGGTGTTTTGAAAGGGGAACTGATCCTCAGAGGATGGACTTGAAGAGGGATTCTTCTGACGACGTTCCCTACACGTTTAAACTGCTGGCAAATTAGGCTGCTTCAGATTCTACAAAGCAAACAGCGGCCTCGCACGCGCCCTGACCCCAACGCATCGTGGGAGCTAAGCTTATCCCCCACCTCCCTCTGATCAATAGAGAAACTCCGTCAAATTGTAAAACACAATTCATGTCCTTCGCTGCACTGTCAGCGCGGTGTGTTGCCACCCATCAACCTTGCCCtcattacatttcagagggagaCCGGCTCATCCCCGCCTGGTCAAGGACGCCCTGTAATAGATGGCTAATGACTTCGCTCTCAAGACCTCTACAACTGTAACTATGGTGGGATGGCCTTCGGCTAACAGTTTTAACCTAACAAGTTGTCAGTGGTCTATATCCTTACGACATTGGCGGAAGggatgtcttgtgttttccttgAGGACACGGAGAAAATGGAGACTCCTCCTGCAGCAGTAAAATGTGGAAGTGTTTGATAAATCATTGCCTGTAACACCAAGCACCTTTAACACTTTGAGCTACAGGATGTGGTTAGAAAGGTACAGGATGTTCTCATGTGATTGGGCACACCAGCTGTGACAAGACTGAGCCCAGAAAGTCTGAGCTGAAAGAAAAGAGACCGCCTGTGTGGTTGTgaaagggttagaggcactcaatGAACTCATGAACCCCGCCCTGCCGTGCCCCAACATCAGTGGACACACCCAGGGCCACACCCACAAAGCCCCCGCTCAGACGACCAAACATGTCTTTTAGTAAATTAATTAAGATCTTCAtgcttattttttgtttctgttgtctTATGAAGCATTGCTGCGAGCAGCAATAACAGAGGATTATTTAATTTGCTTTGTTGATTAAAGATTGAAAGATtgaa
>XM_039792240.1
acagagcgagcagcagcagcctccaGCCCCCCCGTCCCGAAATGAAACAGACCCTTAGCGAACTGATGAGGATGAGCCGGATATGCCGGATGATATTTGCCACTTGTTTGGGATCCTTTATTCTGGTCATCTTTTATTTCCAAATCATGCGGAGGAACCCCTTCGTGGTGGACGGCTGCTGTAGGAAAGggtcccgcaacgccctgcagGAGCTCTACAACCCCACACAGCCGGAGTTGTCTGGAGCAGCCGTCCTCCACCAGTCCAGGAGGGATCAGGTAGTGGATGCCTGTCGCGTCTACAGCGCGTCCAGCCGTAAGCGCAGAGTCCTGACCCCCGGAGACCTCAAACACCTTGTGGTGGACGAGGACCACGAGCTCATCTACTGCTACGTCCCCAAGGTGGCCTGCACCAACTGGAAACGCGTCATGATGGTGCTCACGGGCCGGGGCAAATACAGTGACCCAATGGATATCCCTTCCAATGAAGCCCACATTCCTTCCAACCTGAAGACGCTAAACCAGTACAGTATTGCTGAGATCAACCACCGCCTCAAGAACTACCTCAAGTTCCTGTTTGTTCGCGAGCCCTTCGAGAGGCTGGTCTCGGCATATCGAAACAAGTTCACCCTCAAGTACAACTCGTCCTTCCACAAGCGTTTCGGCACCCGCATCATCCGCCGCTACCGCAAGAACGCCACGCAGGACGCCCTGCTCAACGGTGCTGATGTCAAATTCAAAGAGTTCGCTGAGTACTTGGTGGACCCGGCCACGCAGCGTGACGGCCCACTCAACGAGCACTGGCAGACCGTCTACCAGCTTTGTCACCCATGTCACATCCACTACGACCTAGTGGGCAAGTATGACACGCTGGAAGAAGACGCTAACTATGTGTTGCGGCTGGTGGGTGTTGGCGACTCCTTGCGCTTCCCGAGCTATGCCAAGTCCACTCGTACCACAGATGCCATGACGGCCCAGTTCTTCAGCAATATCAGCACTCAGCAGCAGATCCAACTCTACCAGCTTTACAAGTTGGACTTCCACATGTTCAACTACACCACACCCAGCTACCTCCGGCTGGACTAATGGAGGACGGGGCTGggactctaagaatgaatgccTTGTTTACAGAGAGGCAACAAAATGAGTGGATTTTTTTGAGGCAAACTTGAtttattaattttgttttttttaaactgtcgtCGTAACTTACAGGCGTGGGGGTCGGAATTAGACATATAGATAGgtgctgaaagaaagaaaggtaaTGCGTGCTTGTCTGGGCATAAGGGGGAGGATGAACAATCAACTCTGTGATACAGGGAGCACTGATTGGATAAGAATGTGAGCTAAATGGACCAAATGCATGCAAAGACTAAAATGTGTGGGTGAAGCAGGTCTTCAAGGTGTTTTGAAAGGGGAACTGATCCTCAGAGGATGGACTTGAAGAGGGATTCTTCTGACGACGTTCCCTACACGTTTAAACTGCTGGCAAATTAGGCTGCTTCAGATTCTACAAAGCAAACAGCGGCCTCGCACGCGCCCTGACCCCAACGCATCGTGGGAGCTAAGCTTATCCCCCACCTCCCTCTGATCAATAGAGAAACTCCGTCAAATTGTAAAACACAATTCATGTCCTTCGCTGCACTGTCAGCGCGGTGTGTTGCCACCCATCAACCTTGCCCtcattacatttcagagggagaCCGGCTCATCCCCGCCTGGTCAAGGACGCCCTGTAATAGATGGCTAATGACTTCGCTCTCAAGACCTCTACAACTGTAACTATGGTGGGATGGCCTTCGGCTAACAGTTTTAACCTAACAAGTTGTCAGTGGTCTATATCCTTACGACATTGGCGGAAGggatgtcttgtgttttccttgAGGACACGGAGAAAATGGAGACTCCTCCTGCAGCAGTAAAATGTGGAAGTGTTTGATAAATCATTGCCTGTAACACCAAGCACCTTTAACACTTTGAGCTACAGGATGTGGTTAGAAAGGTACAGGATGTTCTCATGTGATTGGGCACACCAGCTGTGACAAGACTGAGCCCAGAAAGTCTGAGCTGAAAGAAAAGAGACCGCCTGTGTGGTTGTgaaagggttagaggcactcaatGAACTCATGAACCCCGCCCTGCCGTGCCCCAACATCAGTGGACACACCCAGGGCCACACCCACAAAGCCCCCGCTCAGACGACCAAACATGTCTTTTAGTAAATTAATTAAGATCTTCAtgcttattttttgtttctgttgtctTATGAAGCATTGCTGCGAGCAGCAATAACAGAGGATTATTTAATTTGCTTTGTTGATTAAAGATTGAAAGATtgaa

Function

symbol description
chst11 Enables chondroitin 4-sulfotransferase activity. Acts upstream of or within chondroitin sulfate biosynthetic process; motor neuron axon guidance; and muscle organ development. Predicted to be located in Golgi membrane. Predicted to be integral component of membrane. Is expressed in several structures, including central nervous system; notochord; pectoral fin bud; spinal cord neural keel; and spinal cord neural tube. Orthologous to human CHST11 (carbohydrate sulfotransferase 11).

NR:

description
PREDICTED: carbohydrate sulfotransferase 11 isoform X1

GO:

id name namespace
GO:0016051 carbohydrate biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008146 sulfotransferase activity molecular_function

KEGG:

id description
K01017 CHST11; chondroitin 4-sulfotransferase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792239.1 True 2357 mRNA 0.50 4 24384898 24478763
XM_039792240.1 False 2342 mRNA 0.50 4 24384898 24478763

Neighbor

gene id symbol gene type direction distance location
LOC120553464 LOC107381693,LOC105020203 coding upstream 19549 24320276 ~ 24365349 (+)
ift46 LOC107372934 coding upstream 76454 24301765 ~ 24308444 (+)
mkln1 mkln1 coding upstream 135391 24209619 ~ 24249507 (+)
asb13a.1 LOC103363234,LOC100709988,LOC105929846,LOC101482319,LOC102215476,LOC108241840 coding upstream 451022 23924156 ~ 23933876 (+)
gdi2 gdi2,LOC104923747 coding upstream 471085 23899241 ~ 23913813 (+)
nopchap1 LOC104942935 coding downstream 87478 24566241 ~ 24571321 (+)
LOC120553040 NA coding downstream 118587 24597350 ~ 24604947 (+)
LOC120553385 NA coding downstream 142102 24620865 ~ 24635265 (+)
LOC120553387 NA coding downstream 253433 24732196 ~ 24749828 (+)
LOC120553386 NA coding downstream 294738 24773501 ~ 24788753 (+)
G230011 NA non-coding upstream 120833 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 268777 24112965 ~ 24116121 (+)
LOC120553514 NA non-coding upstream 289733 24088025 ~ 24095165 (+)
G229976 net1 non-coding upstream 317909 24065214 ~ 24066989 (+)
G229974 NA non-coding upstream 390063 23994566 ~ 23994835 (+)
G230109 NA non-coding downstream 3547 24482310 ~ 24485517 (+)
G230192 NA non-coding downstream 317190 24795953 ~ 24798741 (+)
G230249 NA non-coding downstream 706049 25184812 ~ 25191943 (+)
G230260 NA non-coding downstream 873114 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 897584 25376347 ~ 25377601 (+)
LOC120553083 NA other upstream 70191 24309542 ~ 24314707 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 439258 23934300 ~ 23945640 (+)
adm2a NA other upstream 536274 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 944235 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1641719 22739717 ~ 22743179 (+)
G230148 LOC102781993,LOC101465723 other downstream 142049 24620812 ~ 24778258 (+)
LOC120553523 NA other downstream 884119 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1163077 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1331644 25810407 ~ 25812828 (+)
arhgef39 arhgef39 other downstream 1559425 26038188 ~ 26106823 (+)

Expression


Co-expression Network