ift46 (LOC107372934)


Basic Information

Item Value
gene id ift46
gene name LOC107372934
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 24301765 ~ 24308444 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039792460.1
TCCGTTGCCAGGATACAGCAGCACCTAGTTGCCAGCTCTATGTTTGCTAGCTACGCTCGCTAACAGACATTGACGTAGCTAGATAAAGGCGTTCAGAGTGAACTCAGACAGTTAGAGAGATATTTCAAACAAACAAGGAGAGTCAGCTTATCTTTGTAGGCGCTTGTATCTGTTAAAGCGTGTGTTTGTTGTCTCGGACGGTTTAAAACCTCCGGTGGTGTGATTCGTTGTTAGAAGCTAGCTGGGTGGCCAATGCTAGTCGGTCATAAAACCTGTAGCTAGCAGCAGTTAAACGGTTCACTCAGTCGTAAGTGCATCTAACGGGTAGACACATTTCTGTaaccttagctagctaactagttgGTTTCACCCGATAATCCGTTAGCGTCCTATGGAGCGGGCTGGCCGGGGGAAAGACACCAGACTGCTGAAGAACCAGCCGTACGACGAGAGCCTGGAGGTGAATGACCCTGATGAGGTAGCGAGCGTCTACAGCCCGATTCCCCTCAGCCAGCGTCAGCCAGAGTCCAGGAGGAGCAggaaggggcgtggcctgatgTCGGCCAACAGTGACGAGTTTACTGAGGACCGCAAGCCTCAGAGGCCCAACGAGCCCGCCGGCGGCCTGCCTGGCGTCAGTCTGAACggagaggacgaggaggaggaggaggaagaagaagaagaggaggaggaagactcCGATGAAGATGACTCAGACGATGACGACGAGCTGGGCGAGGCCCCCGAGGGTGCGTACAACCCCGCCGACTACGCCAACCTGCCCGTCAGCACCGAGATCAAAGAGCTGTTCCAGTATATCACACGCTACAGCCCTCAGCCCATCGAGCTGGAGCACAGCCTGAAGCCCTTCATCCCAGAATTCATCCCAGCTGTCGGTGACATCGATGCCTTCCTGAAGGTGCCGAGGCCGGACGGTAAAGCGGACGACCTGGGTATGCTGTGTCTGGACGAGCCCAGCGTGAAACAGTCGGACCCCACGGTGCTGTCGCTGTGGCTGTCAGAGGAGACCAAGCAGCACGGAGCCAGCGAGttGAAGAAGGTGACGAGTGTAGTCAGCCCCCAGTCCAACCCTCGGGCGGTGGACAGCTGGGTGGAGAGCATCAGCGCGCTGCACCGCTCCAAACCCCCGGCCAGCGTGCAGTACAGCCGTGCGATGCCGGACATCGACAGCCTGATGCAGGAGTGGCCGGCCGAGCTGGAGGAGCTGCTGGGCCGCCTGCAGCTGCCGCCCGCCCGCCTCAACTGCAGCTTGGCCGAGTACACCGACTCCGTCTGCGGCCTGCTGGACATCCCGGTTTACGGCAGCCGGATCCAGTCTCTGCACCTGCTGTTCAGCCTCTACCTGGAGTTCAGAGACTCGCAGCACTTCACGCGCAGAGCTTAGGAAGAGGCTGGAGGATCTACATCAGAGGGACCCACCTGGGGGAGATGCAGGAAGAACTGAAAGCTGACCTCTTGATTTTAAAGTCTGTATTCTGGCTGCTTTGCTTATATTCCTCAAAGTGTCACagacagggttcaaaattaactttttcatcCACCAAATGGATAGATAGATTACTTGTCTTTTTTTGGGccggtgagtgaagcaaatttTCCAGCCCATTGCATATTTTagcagcatttggctggtaaacggtgctaattttgaaccttGGTCCCAGCAGTTGTTTATTGGTTCAGAAATTCTGGGATCATAAGTGAGacattttcagtttgtgttCTGTTTTCCTTTTATACTGTCAAACTTTCAAATATATTATAACCATATACAA

Function

NR:

description
intraflagellar transport protein 46 homolog

GO: NA

KEGG:

id description
K19682 IFT46; intraflagellar transport protein 46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039792460.1 True 1796 mRNA 0.54 5 24301765 24308444

Neighbor

gene id symbol gene type direction distance location
mkln1 mkln1 coding upstream 52258 24209619 ~ 24249507 (+)
asb13a.1 LOC103363234,LOC100709988,LOC105929846,LOC101482319,LOC102215476,LOC108241840 coding upstream 367889 23924156 ~ 23933876 (+)
gdi2 gdi2,LOC104923747 coding upstream 387952 23899241 ~ 23913813 (+)
ankrd16 ankrd16,LOC102787719 coding upstream 403867 23886747 ~ 23897898 (+)
trnay-gua_62 NA coding upstream 414341 23887337 ~ 23887424 (+)
LOC120553464 LOC107381693,LOC105020203 coding downstream 11832 24320276 ~ 24365349 (+)
chst11 chst11 coding downstream 76454 24384898 ~ 24478763 (+)
nopchap1 LOC104942935 coding downstream 257797 24566241 ~ 24571321 (+)
LOC120553040 NA coding downstream 288906 24597350 ~ 24604947 (+)
LOC120553385 NA coding downstream 312421 24620865 ~ 24635265 (+)
G230011 NA non-coding upstream 37700 24260059 ~ 24264065 (+)
G229994 NA non-coding upstream 185644 24112965 ~ 24116121 (+)
LOC120553514 NA non-coding upstream 206600 24088025 ~ 24095165 (+)
G229976 net1 non-coding upstream 234776 24065214 ~ 24066989 (+)
G229974 NA non-coding upstream 306930 23994566 ~ 23994835 (+)
G230109 NA non-coding downstream 173866 24482310 ~ 24485517 (+)
G230192 NA non-coding downstream 487509 24795953 ~ 24798741 (+)
G230249 NA non-coding downstream 876368 25184812 ~ 25191943 (+)
G230260 NA non-coding downstream 1043433 25351877 ~ 25352174 (+)
G230259 NA non-coding downstream 1067903 25376347 ~ 25377601 (+)
LOC120553686 LOC105929833,LOC107382334 other upstream 356125 23934300 ~ 23945640 (+)
adm2a NA other upstream 453141 23833018 ~ 23848624 (+)
kcnc2 kcnc2,LOC100689973,LOC101475944 other upstream 861102 23315421 ~ 23440663 (+)
phlda1 phlda1 other upstream 1558586 22739717 ~ 22743179 (+)
G229428 NA other upstream 2433468 21867201 ~ 21868297 (+)
LOC120553083 NA other downstream 1098 24309542 ~ 24314707 (+)
G230148 LOC102781993,LOC101465723 other downstream 312368 24620812 ~ 24778258 (+)
LOC120553523 NA other downstream 1054438 25362882 ~ 25373996 (+)
msrb3 msrb3 other downstream 1333396 25641840 ~ 25662819 (+)
LOC120553706 NA other downstream 1501963 25810407 ~ 25812828 (+)

Expression


Co-expression Network