phf13 (phf13)


Basic Information

Item Value
gene id phf13
gene name phf13
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12488697 ~ 12496235 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798725.1
AGGCAGCTTCTGACAGTGAACCGCTCCCCCATCAGTCAACAGAAGACATTACCGGACAGCTCGGTGTAAATACAATAGTAACGCTTACTATTCACGGGAGACACTTTTACAACTTGAACCGATTAGTAGGTTCCCACCCGCACTAGTCCAACGTTATCGTTGGTGATGATGGCATACTGAGTAAACACTGTTGCTTCGAGTTTTAGCACAACGTTAAGTTACCTTACGTTGGCgttagatagctagctagctatagcgCTAGGTGTCTAGCAAGCAAAAGCTAGGTAAGTTTAACCTCAGTGTTTACGGCGCGTCGAGTAGCCAGTTGCTCTAGTCTGTCACGTTATCTACACAAAGCCAGGTGGTCGGGTACTTGGTAAAGATGGGTGACATAAACCCATCGACATCCAATGCATTTCAGTCAGAGGGTTTCAGTCCGCCATACCGGAGGAGGACAGTAGAGGATTTTAACAAGTTTTGCACTTTCGTCTTGGCCTATGCCGGTTACATCCCATATCCCCAAGAGGACTCTCCACTGCGCAGTAGTTCCAGTCCTCCCAACAGTACAGGCAGCACCGCTGACAGTGATGGCTGGACTTCGGGACCCCCAACCTCTTGCCCGCAGCGCCCtccaggacaggacaggagcAGGAAACGTCCACAGCCAGGAGCCACGCTGTCCAGTCACGCGAAAGATTACACAATCACCAACCTGCACCCAGATGACCGCAGGAAAGGTGACaagctgaagaagaagaaaaggagaaaggagagggagCATTCGGTTGGTGAGGAAAGCCGGGTTCAGCAGGCCCACTCAACGGTCCCAGAGCTGCAGCACCCCATCTCCTTTGGTGGCCGAACGATCAAAGAAGAGCCTGAGGATGATTTCTGCATTCCCCTCCACCCCCAGCACCTGCCTAACCCAGCCCCCTGCAAGGAGGAGCCCAAGGAGGAGCGTCGGAACTGGGATGGTCAAGACCTTGAAGAAGGGATGGTAAAGGTACAGAAGGTGGAGGGCCTTTCAGGAAACAGAACAGTGTTCCGCCAGGGGAAACAGGTGGTGTTCAGAGACGAAGATGGATCAGGCGAGGATGAGGACATCATGGTAGACTCCGATGACGACTCGTGGGACCTGGTGACGTGTTTCTGCATGAAGCCTTTTGCGGGCCGGGCCATGATCGAGTGTAACCAGTGTAACACCTGGATCCATCTGTCGTGTGCTAAGATCCGCAAGAGCCACGTGCCAGAGACATATGTGTGCCAGAGCTGCCGAGAGTCCCGCGGAACCGCAGATGCCCGTCGCTCCCACCGCTCACGCATAGGCCCACGCAAGCATCTGCTTGACTGACTCCAGGCCGAACCCTGAACTCTGACCCCCTTTCCACTCCTGCTTCCCCTCCACCTGCTGGACTGTCCCTTCCTCCAATTCAGGTCTTGCATCCTTCGGTCTCTGTCCTTCATGGTCAGCCATGAACCcacattttctaaaaaaaataaataaataaaacactttgATGGACCTATCCCAAGCCCTTATCCCATTTGGAAACAGTTTGAGTGCTATTTTAAATTTACTAAGGTTTGTTCCTGCTTCCCTACAGACCCTGTGCGTAAGGCAATCACTGAATGGATGTCTGTTTGTAGATGACATTAGCATAGCAGCAAACCTATACCGTTGTGACTTGGTGTCTCCTGAACACTGGAAACCTTTGAACTGCCATATAGAGAGAATACCCTCACAACTGCCACCCACTATGGTGCATGCTGGGATTTGTGGGAAAGACGGTTAGcacttttctcactttttttttttttttttctttcttcaaaaGAATCCACATGACTGTTCTGTCATAGAGGCAGGTATGTGTTTTCTGATTAAACTGGATTTGATTTCTTTTACCGTTTTTAAAAATGAGAAAACAAGTTAAGCCTTGCGTTAATTGCTTCAGATGGTGCTATAGTATTAAGCTGAGGTATAATCCAGTAGAACAAAGATGTAGGACAATAGACAAGAGACTGCATCTGCTTCATGTGTTTGTTCTGTTTAGTTATTTAAGACATTGTGAAAGAATATCATTGAGGCTTGAAGCCCGTACAACTGAACCAAGCGCTTGTTCCTCTCCCTTCTACTTCACAAACGGTCTTCCAGCCTTGGCTACTCCTCTAAATCAAGACGTTACTTGGCCACACGCAAAGCTTTCATACTATTagcttttcaaaaatgttgaaacgGTGTTCTTATTTCACCAGAATTTTCTTTCTGTTGAGTTTTCTTTCTTCGTAATAAATAACtattatttcacagtttgaaaaAGCCAGATAAGACGAGATTCAGATGACAGTTTTCAGTAAAGGTGTTTTCTGTTGCCTCTGGTCAGTGTTTTTGCTGCATTTTATGACCGGATTAAACAGAGGTATTGTTATTAAATATCTTATTTGCCAAACAGTTATTTAAATTCACCTTTTGTTTTCAACCGTTCCATGCTCATGACAGTTTTCAGAGACAAGTATATTCACAGAAGGGAACTCATATGGCCGTCCTGTTAGGCCGTCCTGTTTAAGTATCAAAAAGCTAGCTTTACTGGAATAGTGTTGTTAGAAAGATTCTGTCAAGAGTCCATTTGAAATTATGCATGcaagtttgtgtttgtttgaatgGTTGAAACTGTGTGAGGGTGCAGGCAAAGCATGTCCTGGTATGGCTCAACTAAGCTTCATGGTTTTTGGCCTTTTTGTAAGATTGAGAAAATGGATATCAGCAAAGCACCATGGGCAGGGTcggtttgttttgtgtgtctctgaaaGGTCAGACCAGAAGAACAGATCTCGGTCTCTTATCACCTCTCACTAATGTTTTCACAGCAGTATTAGTTTACTTCCATATGCAGCGGGTTGTTTTGTAGGGAACGTTTTCCTCAAAACTTGCTGGAAATTTGATTTTAAGCATTGGTATTCATGTGCCATCTGCTGTTGTTTCTGATTATATAAAAGCCATACTGTTGTGACAGATTTTAGACTCAGAACCTTTATCTTAGTCAAGGATGGGATTTTACAATGCAGAGAATCAACGACTTGCCTAGGGAATGACTAACACACACAATGAATGTTTGGTatgcaaagaagaaaaaactttCTTAGAGTATAAAGTGGTTAAGCTCATCTCTGCACTTGTCTTCTGGTATTTACAGATGTTGGATAACTAGTCCGTACCCAGCAATTGCCAGATCTGTGGTGTTTTTAGGATGTTTCAAGACCTAAAATCATTTTCGGTTTCTCAGGACGTTCATGTCTTGAGAACCTGAAGAGACTTCTTCAGGCACAAATTTCTAATTTTAATCTGCGTCTTTAAAACATCTGTAATGTTAACAATGCTCGTTTATTCTGATCTTGGATAATCCTATCCCCTTATTAAGAAAGCGTTTTCTGTACTGTGGTGCAAACTGTTTCTGTGAAACTATTGTAAACTATTGTAAATAAAGAGTTACCATTTTAA

Function

symbol description
phf13 Predicted to enable metal ion binding activity. Orthologous to human PHF13 (PHD finger protein 13).

NR:

description
PHD finger protein 13 isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798725.1 True 3499 mRNA 0.44 5 12488697 12496235

Neighbor

gene id symbol gene type direction distance location
LOC120557555 NA coding upstream 49322 12394585 ~ 12439375 (+)
LOC120557854 LOC103386109,LOC100136371,LOC104937510,LOC102227505,LOC103464934 coding upstream 118051 12339555 ~ 12370646 (+)
LOC120557853 LOC103354987 coding upstream 156923 12307361 ~ 12331774 (+)
eif4ba eif4b coding upstream 191662 12281677 ~ 12297035 (+)
tgm2b tgm2,LOC103354993 coding upstream 360987 12114008 ~ 12127710 (+)
LOC120557182 camta1 coding downstream 11778 12508013 ~ 12560180 (+)
hipk1b LOC103354978 coding downstream 65594 12561829 ~ 12582404 (+)
pusl1 pusl1,LOC102782008 coding downstream 164278 12660513 ~ 12674959 (+)
LOC120557860 NA coding downstream 215250 12711485 ~ 12715490 (+)
mapk14b LOC104939458,LOC103028137,LOC108436315,LOC100692416,LOC103386138 coding downstream 258276 12754511 ~ 12776399 (+)
G37742 NA non-coding upstream 38149 12450052 ~ 12450548 (+)
G37729 NA non-coding upstream 103051 12385390 ~ 12385646 (+)
G37728 NA non-coding upstream 103481 12384991 ~ 12385216 (+)
G37725 NA non-coding upstream 104962 12383456 ~ 12383735 (+)
G37718 NA non-coding upstream 188202 12300250 ~ 12300495 (+)
G37761 NA non-coding downstream 88422 12584657 ~ 12585811 (+)
G37768 NA non-coding downstream 103205 12599440 ~ 12599671 (+)
G37769 NA non-coding downstream 107563 12603798 ~ 12606662 (+)
G37778 NA non-coding downstream 165536 12661771 ~ 12661985 (+)
G37783 LOC103386132,LOC107099520,LOC105931731,LOC106513340 non-coding downstream 184893 12681128 ~ 12682749 (+)
G37730 NA other upstream 101522 12386171 ~ 12387175 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other upstream 210073 12274760 ~ 12278624 (+)
G37714 NA other upstream 233723 12253066 ~ 12254974 (+)
G37597 NA other upstream 683303 11780178 ~ 11805394 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other upstream 1094299 11385184 ~ 11394398 (+)
cdab cda,LOC103354969,LOC106590862 other downstream 219925 12716160 ~ 12719493 (+)
b3galt6 b3galt6 other downstream 238291 12734526 ~ 12741048 (+)
tmem167b tmem167b other downstream 252973 12749208 ~ 12752285 (+)
kif21b kif21b other downstream 329281 12825516 ~ 12907935 (+)
spcs1 spcs1 other downstream 709234 13205469 ~ 13208258 (+)

Expression


Co-expression Network