tgm2b (tgm2,LOC103354993)


Basic Information

Item Value
gene id tgm2b
gene name tgm2,LOC103354993
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12114008 ~ 12127710 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798915.1
GGgactataggcctatatataagaCCGAGACAACGACGAGGAGTGAATATAATACTTGTCTCTGAGCTGGAGATTCACTGAAAACACCGCTTAGTCAAAGATCACAGCAGCAGTCATGGCTCAAGCTCTGGACATTGATCGCTGGAACCTGGAGTGTGAGTTCAACAACACCGACCATCGCACTGATCTCAACGGAGTAGATCGTCTGATCGTGAGAAGAGGCCAACCGTTCACAATCAGCCTGTACCTTCGCTCCGGAATCTACCAACCGGGAGACAGCTCTCTTGACTGCGTCGCAGAAACAGGTCCTCAGCCCTCTGAGCAGTATGGCACCAGGGCCTCCTTTGGGCTGTCTGCCAACATTGACACTTCCCGTTGGAGCGCCACTGTCACCAGCCCCCCcggggacatggtggccctgtcCGTCTGCTCTGCTCCTGACGCACCTATAGGCCGCTACACCCTGACTCTGGGGCGATCAGGGCGGATTGAGTTCATCCTGCTCTTTAACCCCTGGTGTCCAGGAGATGCAGTATACATGGACAATGAGCAGAGTTTGGAAGAGTATGTCTTATCTCAGGATGGAATCATCTTTCGAGGCAGCAACAAATATCCCATATCTACTCCATGGAACTTTGGCCAGTTTGAAAGTGGGATTCTGGACATCTGTCTGAGGATTCTGGATATGAATcctaaatgtctgaaaaatcCTGGCAAAGACTGCTCAGGGAGGAGAAATCCCATCTATGTTTCCAGAGTGCTTAGTGCCATGGTAAATTGTAATGACGACAAAGGGGTGTTGCTGGGAAAATGGACAGATGGCTATGAAGGAGGTGTCAGCCCCATGTTCTGGAGGGGCAGTGTGGAGATTCTGCGTAACTGGGACACACAAGCCTGTCAGCCTGTTCGCTACGGACAGTGCTGGGTGTTTGCTGCAGTGGCCTGTTCAATTTCCCGAGCCCTTGGCATCCCCTGCCGAGTTGTCACCAACTACCTTTCGGCCCATGACAACAACAGCGACCTGGTGATCGAACGCTACATTAATGAAAATGGAGAACTCATTCAGTCTAGAGAAATGATCTGGAATTATCACTGCTGGGTGGAAAACTGGATGACCAGGCCTGACCTAAAATCAGATTTTAACGGCTGGCAGGCCAGTGACCCTACACCTCAGGAGAAAAGTGAAGGAGTATACTGCTGCGGCCCCATCCCTGTCAGGGCCATCAAGGAGGGCGAGCTCGCGTTCAATTACGATGCCCCGTTTGTCTTTGCTGAGGTCAATGCGGATGTCATCACCATCATGAAGAAAAAAGATGGCAACACATCGAAAGTCACTAGCACTGCAGTGGTGGGCCAGAAGATCAGCACAAAGAGTGTTGGCAGTGACACCAGAGAGGACATCACTCATCTCTACAAGTACCCCGAAGGCTCGGATGAAGAGCGGGAGGCTTTTAAGAAGGCTAACCACCAAAACAAGCTGCTCCATCAGCAGGGAAATGAAGGCCTACACATCACTATCAAGGTCAGCTCAGACATGAGGAAGGGCTGCGACTTTGACGTGTTTGCTGTGGTTACAAACAACACGCAAAGCGAGAAGAAGTGCCGTCTGGTGTTTGGGTCCTGCGTTGTGTCCTACAACGGGTTTCTGGGAAAGAATTGTGGTTTTAAAGATCTGCTCAATGTTGAACTCTCCCCAGGAGAAGAGAGGCGAGTTCCACTAAGGCTCAACTACTCTAAGTACGGTGTCTTACTCACTGAGGACAACTTAATCCGACTTGCTGTCCTGTTGATGGACTACTCAACCAGAGAGACAACACTGGTAGTGAGAAACATTGTGCTGGACAATCCTGAAATCAAAGTCAGAATCCTGGGTGAACCAAAGGAGAATCGGAAGCTGGCTGCAGAGATCACCCTCAAAAACCCTCTGCCAGAGCCGCTGGAGAACTGCTGCTTCAGCATCGAGGGGGCCAACCTCACTGCAGGAAACGTCATCTCTGAGAGGCTGGGCTCCTCAGTGGGACCTGGGGAAGATGCCAAAGTGAAAATTTACTTCACTCCAACCCATTCTGGGCTGAGAAAGCTGGTGGTCGACTTCGACAGCAACAAGTTGTGTCACGTCAAGGGCTACAGAAATGTCATTATTGGAAAATGAAGACTTTCAACCTTTACAGTCCATTAGTCAGCAGTACTGTTACTCTTTTGTAACTTTTAACTGTTTAGCCATCTGAGGATAAGCAATTGCACCCTGTTTTGCACAGTGTTTAATTCATAAAATGCTTTTCTATTGAAATACTTCTCACTGTTTATCCCTAAATGCATCATGTAtatctgtttttattcattGCCGTAGATATTTAAATGTGAACGCTTAGTACTCATTAAGGCTAATCACATCTGTGTACGCAAAACCTTTAACAGCATTATGTACTGTGATATTAAGTGATGATTAATATTTCAAATACTATGTAATATTTTTATACTTTAGACAATTAAAAGAgttgtttcatta

Function

symbol description
tgm2 Enables several functions, including GTP binding activity; N-acyltransferase activity; and protein-glutamine gamma-glutamyltransferase activity. Involved in several processes, including cellular calcium ion homeostasis; cellular protein modification process; and cellular response to organonitrogen compound. Located in several cellular components, including chromatin; mitochondrion; and perinuclear region of cytoplasm. Is intrinsic component of plasma membrane. Colocalizes with collagen-containing extracellular matrix.

NR:

description
PREDICTED: protein-glutamine gamma-glutamyltransferase 2-like

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K05625 TGM2; transglutaminase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798915.1 True 2509 mRNA 0.48 13 12114008 12127710

Neighbor

gene id symbol gene type direction distance location
LOC120557971 kiaa1755 coding upstream 2167 12081105 ~ 12111841 (+)
myl9b LOC100697131,LOC101062217,LOC105901900,LOC103386121,LOC106565219 coding upstream 208254 11893590 ~ 11905754 (+)
LOC120557335 LOC103359258,LOC101476783 coding upstream 731828 11376535 ~ 11382180 (+)
LOC120557333 evc coding upstream 738196 11361406 ~ 11375812 (+)
msx1a msx1 coding upstream 781362 11330556 ~ 11332646 (+)
eif4ba eif4b coding downstream 153967 12281677 ~ 12297035 (+)
LOC120557853 LOC103354987 coding downstream 179651 12307361 ~ 12331774 (+)
LOC120557854 LOC103386109,LOC100136371,LOC104937510,LOC102227505,LOC103464934 coding downstream 211845 12339555 ~ 12370646 (+)
LOC120557555 NA coding downstream 266875 12394585 ~ 12439375 (+)
phf13 phf13 coding downstream 360987 12488697 ~ 12496235 (+)
G37691 NA non-coding upstream 3220 12109304 ~ 12110788 (+)
LOC120557465 NA non-coding upstream 89271 12024330 ~ 12024737 (+)
G37606 NA non-coding upstream 251038 11861473 ~ 11862970 (+)
G37595 tpra1 non-coding upstream 256311 11775341 ~ 11857697 (+)
G37588 NA non-coding upstream 437980 11659300 ~ 11676028 (+)
LOC120556983 NA non-coding downstream 25055 12152765 ~ 12165645 (+)
G37718 NA non-coding downstream 172540 12300250 ~ 12300495 (+)
G37725 NA non-coding downstream 255746 12383456 ~ 12383735 (+)
G37728 NA non-coding downstream 257281 12384991 ~ 12385216 (+)
G37729 NA non-coding downstream 257680 12385390 ~ 12385646 (+)
G37597 NA other upstream 308614 11780178 ~ 11805394 (+)
LOC120557336 LOC103359259,LOC100704408,LOC101476502,LOC102796717,LOC102216118 other upstream 719610 11385184 ~ 11394398 (+)
G37525 evc2 other upstream 761621 11352078 ~ 11352387 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other upstream 1101099 10997230 ~ 11012909 (+)
glrx glrx other upstream 1717821 10387908 ~ 10396187 (+)
G37714 NA other downstream 125356 12253066 ~ 12254974 (+)
LOC120557851 krt18,LOC105931717,LOC101469154 other downstream 147050 12274760 ~ 12278624 (+)
G37730 NA other downstream 258461 12386171 ~ 12387175 (+)
cdab cda,LOC103354969,LOC106590862 other downstream 588450 12716160 ~ 12719493 (+)
b3galt6 b3galt6 other downstream 606816 12734526 ~ 12741048 (+)

Expression


Co-expression Network