RNA id: XM_039798915.1


Basic Information

Item Value
RNA id XM_039798915.1
length 2509
RNA type mRNA
GC content 0.48
exon number 13
gene id tgm2b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12114008 ~ 12127710 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGgactataggcctatatataagaCCGAGACAACGACGAGGAGTGAATATAATACTTGTCTCTGAGCTGGAGATTCACTGAAAACACCGCTTAGTCAAAGATCACAGCAGCAGTCATGGCTCAAGCTCTGGACATTGATCGCTGGAACCTGGAGTGTGAGTTCAACAACACCGACCATCGCACTGATCTCAACGGAGTAGATCGTCTGATCGTGAGAAGAGGCCAACCGTTCACAATCAGCCTGTACCTTCGCTCCGGAATCTACCAACCGGGAGACAGCTCTCTTGACTGCGTCGCAGAAACAGGTCCTCAGCCCTCTGAGCAGTATGGCACCAGGGCCTCCTTTGGGCTGTCTGCCAACATTGACACTTCCCGTTGGAGCGCCACTGTCACCAGCCCCCCcggggacatggtggccctgtcCGTCTGCTCTGCTCCTGACGCACCTATAGGCCGCTACACCCTGACTCTGGGGCGATCAGGGCGGATTGAGTTCATCCTGCTCTTTAACCCCTGGTGTCCAGGAGATGCAGTATACATGGACAATGAGCAGAGTTTGGAAGAGTATGTCTTATCTCAGGATGGAATCATCTTTCGAGGCAGCAACAAATATCCCATATCTACTCCATGGAACTTTGGCCAGTTTGAAAGTGGGATTCTGGACATCTGTCTGAGGATTCTGGATATGAATcctaaatgtctgaaaaatcCTGGCAAAGACTGCTCAGGGAGGAGAAATCCCATCTATGTTTCCAGAGTGCTTAGTGCCATGGTAAATTGTAATGACGACAAAGGGGTGTTGCTGGGAAAATGGACAGATGGCTATGAAGGAGGTGTCAGCCCCATGTTCTGGAGGGGCAGTGTGGAGATTCTGCGTAACTGGGACACACAAGCCTGTCAGCCTGTTCGCTACGGACAGTGCTGGGTGTTTGCTGCAGTGGCCTGTTCAATTTCCCGAGCCCTTGGCATCCCCTGCCGAGTTGTCACCAACTACCTTTCGGCCCATGACAACAACAGCGACCTGGTGATCGAACGCTACATTAATGAAAATGGAGAACTCATTCAGTCTAGAGAAATGATCTGGAATTATCACTGCTGGGTGGAAAACTGGATGACCAGGCCTGACCTAAAATCAGATTTTAACGGCTGGCAGGCCAGTGACCCTACACCTCAGGAGAAAAGTGAAGGAGTATACTGCTGCGGCCCCATCCCTGTCAGGGCCATCAAGGAGGGCGAGCTCGCGTTCAATTACGATGCCCCGTTTGTCTTTGCTGAGGTCAATGCGGATGTCATCACCATCATGAAGAAAAAAGATGGCAACACATCGAAAGTCACTAGCACTGCAGTGGTGGGCCAGAAGATCAGCACAAAGAGTGTTGGCAGTGACACCAGAGAGGACATCACTCATCTCTACAAGTACCCCGAAGGCTCGGATGAAGAGCGGGAGGCTTTTAAGAAGGCTAACCACCAAAACAAGCTGCTCCATCAGCAGGGAAATGAAGGCCTACACATCACTATCAAGGTCAGCTCAGACATGAGGAAGGGCTGCGACTTTGACGTGTTTGCTGTGGTTACAAACAACACGCAAAGCGAGAAGAAGTGCCGTCTGGTGTTTGGGTCCTGCGTTGTGTCCTACAACGGGTTTCTGGGAAAGAATTGTGGTTTTAAAGATCTGCTCAATGTTGAACTCTCCCCAGGAGAAGAGAGGCGAGTTCCACTAAGGCTCAACTACTCTAAGTACGGTGTCTTACTCACTGAGGACAACTTAATCCGACTTGCTGTCCTGTTGATGGACTACTCAACCAGAGAGACAACACTGGTAGTGAGAAACATTGTGCTGGACAATCCTGAAATCAAAGTCAGAATCCTGGGTGAACCAAAGGAGAATCGGAAGCTGGCTGCAGAGATCACCCTCAAAAACCCTCTGCCAGAGCCGCTGGAGAACTGCTGCTTCAGCATCGAGGGGGCCAACCTCACTGCAGGAAACGTCATCTCTGAGAGGCTGGGCTCCTCAGTGGGACCTGGGGAAGATGCCAAAGTGAAAATTTACTTCACTCCAACCCATTCTGGGCTGAGAAAGCTGGTGGTCGACTTCGACAGCAACAAGTTGTGTCACGTCAAGGGCTACAGAAATGTCATTATTGGAAAATGAAGACTTTCAACCTTTACAGTCCATTAGTCAGCAGTACTGTTACTCTTTTGTAACTTTTAACTGTTTAGCCATCTGAGGATAAGCAATTGCACCCTGTTTTGCACAGTGTTTAATTCATAAAATGCTTTTCTATTGAAATACTTCTCACTGTTTATCCCTAAATGCATCATGTAtatctgtttttattcattGCCGTAGATATTTAAATGTGAACGCTTAGTACTCATTAAGGCTAATCACATCTGTGTACGCAAAACCTTTAACAGCATTATGTACTGTGATATTAAGTGATGATTAATATTTCAAATACTATGTAATATTTTTATACTTTAGACAATTAAAAGAgttgtttcatta

Function

GO:

id name namespace
GO:0018149 peptide cross-linking biological_process
GO:0046872 metal ion binding molecular_function
GO:0003810 protein-glutamine gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K05625 TGM2; transglutaminase 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50577 lncRNA upstream 3220 12109304 ~ 12110788 (+) True G37691
XR_005638970.1 lncRNA upstream 89271 12024330 ~ 12024737 (+) True LOC120557465
TU50441 lncRNA upstream 251038 11861473 ~ 11862970 (+) True G37606
TU50427 lncRNA upstream 256311 11775341 ~ 11857697 (+) True G37595
TU50419 lncRNA upstream 437980 11659300 ~ 11676028 (+) True G37588
XR_005638918.1 lncRNA downstream 25055 12152765 ~ 12165645 (+) True LOC120556983
TU50620 lncRNA downstream 172540 12300250 ~ 12300495 (+) True G37718
TU50642 lncRNA downstream 255746 12383456 ~ 12383735 (+) True G37725
TU50645 lncRNA downstream 257281 12384991 ~ 12385216 (+) True G37728
TU50646 lncRNA downstream 257680 12385390 ~ 12385646 (+) True G37729
XM_039798726.1 mRNA upstream 2167 12081105 ~ 12111841 (+) True LOC120557971
XM_039797802.1 mRNA upstream 208254 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA upstream 208254 11900776 ~ 11905754 (+) True myl9b
XM_039797570.1 mRNA upstream 719610 11385184 ~ 11394398 (+) True LOC120557336
XM_039797569.1 mRNA upstream 731828 11376535 ~ 11382180 (+) True LOC120557335
XM_039798481.1 mRNA downstream 147051 12274761 ~ 12278624 (+) False LOC120557851
XM_039798488.1 mRNA downstream 153967 12281677 ~ 12296149 (+) False eif4ba
XM_039798487.1 mRNA downstream 154061 12281771 ~ 12296149 (+) False eif4ba
XM_039798482.1 mRNA downstream 155411 12283121 ~ 12297035 (+) True eif4ba
XM_039798489.1 mRNA downstream 155411 12283121 ~ 12297035 (+) False eif4ba
TU50430 other upstream 308614 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 719674 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 761621 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 1115871 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1804012 10305187 ~ 10309996 (+) True G37197
TU50615 other downstream 125356 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 147050 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 258461 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 588450 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 608157 12735867 ~ 12741048 (+) False b3galt6

Expression Profile