RNA id: TU50646


Basic Information

Item Value
RNA id TU50646
length 257
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G37729
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12385390 ~ 12385646 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCAATCCGGATCTGACACAGTGCCAAAAGTTCCTGAAAGAgctaaacctgcctcttctcgacccagaggaggcagaagaactgggtcaacctATTACGTTAGAGGAACTCAAATCAGCGTTAAAAACACCGAggttggatggaattccatcagaacttTTACTACAGTACTTTGACATACTAGGACCTATCATTTTATAAACTTTAACCTCGGGCATAGAGAGGGGCACctttcatcaacaaaccaacaccGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50645 lncRNA upstream 174 12384991 ~ 12385216 (+) True G37728
TU50642 lncRNA upstream 1655 12383456 ~ 12383735 (+) True G37725
TU50620 lncRNA upstream 84895 12300250 ~ 12300495 (+) True G37718
XR_005638918.1 lncRNA upstream 219745 12152765 ~ 12165645 (+) True LOC120556983
TU50577 lncRNA upstream 274602 12109304 ~ 12110788 (+) True G37691
TU50675 lncRNA downstream 64406 12450052 ~ 12450548 (+) True G37742
TU50696 lncRNA downstream 199011 12584657 ~ 12585811 (+) True G37761
TU50703 lncRNA downstream 213794 12599440 ~ 12599671 (+) True G37768
TU50705 lncRNA downstream 218152 12603798 ~ 12606662 (+) True G37769
TU50715 lncRNA downstream 276125 12661771 ~ 12661985 (+) True G37778
XM_039798500.1 mRNA upstream 14744 12339555 ~ 12370646 (+) True LOC120557854
XM_039798492.1 mRNA upstream 53616 12312049 ~ 12331774 (+) False LOC120557853
XM_039798010.1 mRNA downstream 8939 12394585 ~ 12436726 (+) False LOC120557555
XM_039798006.1 mRNA downstream 8943 12394589 ~ 12439375 (+) False LOC120557555
XM_039798009.1 mRNA downstream 15260 12400906 ~ 12439375 (+) True LOC120557555
XM_039798007.1 mRNA downstream 15260 12400906 ~ 12439375 (+) False LOC120557555
XM_039798725.1 mRNA downstream 103051 12488697 ~ 12496235 (+) True phf13
XR_005639029.1 other upstream 106766 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 130416 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 579996 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 991056 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 1033003 11352078 ~ 11352387 (+) True G37525
TU50647 other downstream 525 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 330514 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 350221 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 439883 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 806132 13191778 ~ 13191911 (+) True LOC120558254

Expression Profile