RNA id: TU50705


Basic Information

Item Value
RNA id TU50705
length 2842
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G37769
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12603798 ~ 12606662 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCAGACAGTCAGGATCCGTGATAGAATGCTGAGAGGCAGGAAGTTGGCGTTAAGTTGAAATACACAAGTGTACTATTTACAGCAGGTTTGCTTTGAACAGCACCTTTAACCACTCCTatgtcaacacacacaatagacacaACATGTAATACTTCTTCTAGAGCGAGGACTCTAAACAGTTTGGTCACAGTAGCTTCACATCACCTGGTTCTACTTGCAGTACATTGAACTATTGCAGATCAGCACCTGCCATATCAAAATCTCTGTCACATTTCTGTAACCTCTTATCAACATGTGAGTTCACCAACAGTGTTTCTACCACTCTGTCACTTCACAAAGCATGGCAAAACTATGCTGTATCTACTCTGAAcagtttcagttaaaaaaaaacggtgATATCATACAACAATGTCAGACACTTTCCCTTTAAAAAGTCTTTGGTAAACGAAaataaaccacaaaaaaaaaaaacactatttgtAAGCTTTTGTGGAAaccaaaaaaagagaggaatgaGGAAGTCACCACAGGTTTGGTCCGTCGATGGACGAATGGCACAGAGGTGCAAAAAGTAAGACATTTCTGACACCAGAGGGGTTATGGTGgtacatgcttatttcacaggaCTGCACTGCACGGCGTGATCAAACCATAGGAAAATATTTTATCATGCTCAGAATGCAAACAATGTTGAACCTCCCAAAGTCAATTCTGGCAAAGCATGCAGAGAATACAGCAAGCATTGGCCAGTGAGGGAAGCCAGCTATACAAGTCCTTTTACCCCACAAGTATCTAAACTGTTCTAAAGAAATGTGCTCCTTTATCTCACCACAGATACTGTAACATGGATTAGTATTTACAACAAAATGAAGGTGTCAtgattcacattttttttttttaaggaagtgAACAGACGAGTTGTTTAAGGGTGAGACGTAAATCCAGTTTTATATACTCCCTCACTTCTTGCTGCTCTGCTTTGTCTCTACATCACAATAAGTCCTCATCCTCACATAGTAAACAATAAATGACTGCaattaatttgaaaaaatgaaACATTCTAGAACTTCCACAGATAAGCTACTAAAATCTCTTTCAGTGGTGTGTTTGAATGCCAATAATTATAGCAATGTAAGGCCGTTCCAAAGGGAAAGTGAATGCAAAATGTCTTTTATGAGTGCCATGAATTCCAAGTAATGCTTTCAGATTAAAAAGACAATCATTAACAGAAATGCAGATTTATACTGCACCCAAGAATGCATTGCACTGGTCCTCTGGGGAagataaacataaataaaatgataGAATAGaaaacagatagatagacaatAACTTGATAAGACAAGAACAATGTAAAAACTAACTGAATGAAAAATTATAATATTGTAGATGGGAAAAGTGCAGTTTTTTAACTTTACATAATGTACCATATCATATTATTTAACTCTGTCTCTCAGTATTCTTTGACACACTATCACTCATATACTCTCCTgtccactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcactcacaaagTATCTTACAAAGCAGGCAAGGGTCTCTTCTCCACAAGCCCTTCAGTATTTTTTGTCACAGTTTTACATTAGATTTCCCTTCCTGATCACTCTTTATACACAGTAAACTACCCTGCCTCTACTGCAGCTTGTCAGTTACTCTTTTTCTTTATGTAATGGAACAAATACCATTTTTTCACCTCATGCCACAGCACATAGTTTAAAGATTACCCATATAACTTCTAAGTACGTATATTTACATCTCCAATTAAGAAGAGATGGGTACATTGAATGTCACACAGATGGTCTGGATAAATATAAAGTGTAGGGGGGTTAATGCAGCGAGAGTCTTAGAGAGAGGTAAGAGCTGTTAGACAACAGTAAacccacacccccacaccaCAGGTTAAACCACATTATAAGTTAGAGGAGAACCCTGTTAGCAAAACACCAAGAAGCAGATGTCATTTTTACTGTGTCATGTAGCTAGCATAGCGTGGGTGTTGCAGAGTAATGGCAAGCAGAAACATAGTGGTGATGCAGAAAAATGGAGGTGGTGACTGTATTGTCAGTAGAGTTAAAAAAGGTCCATCAGGGGCTCCCTCCCTTTTACACAACACACCCCCTTATTGCGCAAGTGGTACACTCCTCTCTCCTCAGACACTCCTAAGAAGTTGCCCGTAAGCATAGATCAACGTAAGTAACAGACTTGAGATCAGTGTCTACGGGCAACTTAGTCTACACAATTAGTTAGGTTTCCATTCAGgaggaatatactgtatatatactgtatatatatagagagagagagagcacaagCTTTGCTCCTGGATACAGAAGTGACCACTAGCACTCTTCTATGGTGAGGCAGATGAATTCCTGGATGCACTTCCTATACTGCTGCTCAGTGGGGCTGCTGCTGGGATATTGACCTGGTTGACCCAAGGGAGCCTCCGCCTCTCGCATCTCCTCATTCATCCGGGCAAGACGCAATctggaggagagaagaaaaagacataGGCAGAGGGAGACAAGTGATAGAACAGAGGGGACAAACATGGAAGTAGAAATGAGAAATGGGATAGTAAGAGGACAAAAGGCAGGTGAGAAAGGAATAGGGAATGAAAAGATGAAGATGTTAAGGTGGGATGAGACCATGAAAATGGAAATGTGGTGAGGTGATAAAGATAAACCCCAATGGAGAGAAGAGGacgagaggagggagggagggaaggaaagagagagtaaAGACAACAATGAGGAATACAATTTAGACAATTAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50703 lncRNA upstream 4127 12599440 ~ 12599671 (+) True G37768
TU50696 lncRNA upstream 17987 12584657 ~ 12585811 (+) True G37761
TU50675 lncRNA upstream 153250 12450052 ~ 12450548 (+) True G37742
TU50646 lncRNA upstream 218152 12385390 ~ 12385646 (+) True G37729
TU50645 lncRNA upstream 218582 12384991 ~ 12385216 (+) True G37728
TU50715 lncRNA downstream 55109 12661771 ~ 12661985 (+) True G37778
TU50722 lncRNA downstream 74466 12681128 ~ 12682749 (+) True G37783
TU50860 lncRNA downstream 90563 12697225 ~ 12700679 (+) True G37882
TU50883 lncRNA downstream 142559 12749221 ~ 12752281 (+) False tmem167b
TU50970 lncRNA downstream 307408 12914070 ~ 12914413 (+) True G37966
XM_039797923.1 mRNA upstream 21394 12561829 ~ 12582404 (+) True hipk1b
XM_039796315.1 mRNA downstream 53851 12660513 ~ 12674959 (+) True pusl1
XM_039798509.1 mRNA downstream 104823 12711485 ~ 12715490 (+) True LOC120557860
XM_039797395.1 mRNA downstream 109516 12716178 ~ 12719493 (+) True cdab
XM_039797394.1 mRNA downstream 127864 12734526 ~ 12738534 (+) False b3galt6
XM_039797390.1 mRNA downstream 129206 12735868 ~ 12738534 (+) True b3galt6
TU50647 other upstream 216623 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 325174 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 348824 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 798404 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1209464 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 109498 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 129205 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 218867 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 585116 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 586585 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00002003 True 4367 mRNA 0.49 14 CM030136.1 133459 ~ 152192 (-)