RNA id: TU50860


Basic Information

Item Value
RNA id TU50860
length 2554
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G37882
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12697225 ~ 12700679 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTTGTACATCCCCCCGCCCCCAGAATCATTTGCAATACTGTACTTTCTGAGATCGTAGTCTGTTGCGCAGTTGTCCAAGCCAAGTGTCTTAACTCTCCTTTAAACAAATCAGGAGTGTGAATTTCAAATTCTTGATGGGATTATTTGCTCATCTTTCTTCCCATTTTCTGTCTCCTTCCATATGCGATATTTCCAAAGAATGGGATGCTACTTTCTCACAGTGGAAACTGCTGCCTGACCTTCCTTGGCAGCTAGATAGCCAATCTAATAACAACAGCAGAAAATGTACAAAGTACATATGCAAAAGGTCAGCCAAGCTATTTGCTAGTGTATTCACCTTTCTGATACAAAACTATATTTTCGTGTTTTTGCTACAGtttttaaaacagttaaaaaaaaagcaacatcaaGTACATTATTCCTTACACCACAATCAACACTAAACAGTAAATAGTACTTTATCATAATCTTTATTACAAGATATTAGGCCACTGTACAAATCAGTGTGAATCATACAGTACAATGCAGAATTAAGACTGTTTCTTGAGGTTTGTCATTCAAAGCTGTATACGAGGTGCTTCAAGAATACACAAGAGTTTCAGAACTTCTGCCGTGCATGCATGATTTCATATTTGCCATGCATGAGTTGGTATCTCAGTGTTTTAAGAAAGAGCCCTAAAAAATGGCGACCCAACAAAACAACTGAATTGTATGACTAAATGTATAAAGCACAAAAAACGAACAAGTTGTCTGGTACAGTATAATTCCTCATGAGATTTGGCACACACGATAATGCACAATGCAATATAAATAGTTTATCAATAGGGTGTGTACACAGTCAAGTTACAGTATCAACCAATCCAGGTAAACGCCTGGGAAGCTTACAAACAGTTGGGGGACACTGTATATAAATGACTCGTTAGCTGCAAAGTATGTTAACAAAAAACACCCAGGCAACATCAAGAATTgttaagtgaaaaaaaatgtcactcCCATTCACTCAAGTTTTCTCGACATACAAAAGACCACTCCCTCTGGCTTTAAGTCACTGCAAAAGACATATTCCAAAGGATCAATAAATAAAGTCTTCAACACAGAGAACAAACCAGTTTACCGCTTTCCACTTTGTGCAAGAAAATATGGGCTACCCTTTCCATATTTACAAACTCTGTTATTCATTTGCCCTCGATCAAAATGAAGAGCAGAAATAATGGTACCATTTGTTTGATTGATAAGATATAGGAGAAGTGTGTGCTTTAGTTTTTATATTAGATTCATTTCTGTATCCTGTCCCTGATTTCTGCATTTCGACAGCATCCCCTCCTTCCACCACCTTATTACCCCCCTCTTGTTGTTTTCTCCCACTTTTGGATTTATGGCGAAACCCTGCAATcgagggtgtgtttgtgtgtgtgttgtgtgtgtcggGGGGGGGGTCCACCTGGGGGTCTCCTTCGCTGCCATCTCCCGCCCCTGCCAGTGTGTGTCACCCGGATGGCCGTGACTGACTGGGAGAGGAGGGCGTGGAAGTGCTGCTTGCTGCCACAAGAGAGAAAGTGCTTATATACAGTGTCTTTGGATTAAAACTGGTAAATATCGCCATAAAAAATTTCAAGAGTgtcttttgggggggggggtgttgagCTGAGCGCTCTAAGCCTCTGCCGGGGTCTTCTCTGTTCCATTTTTCAGTGCTTCATTGTCGCCATTCTCATCCTCAATCACAACCCGTTTGCTCCTGCCTATTTGTCCGAGTTTCGGCGGACGTTTGTTCTGTGATCCATTGAAGAAGTTGTTGGTGTCTTGAAGACGACAGGTGAAGGAAAGGTGTCCCTCGTCGCCCTCATTTCCATAATGACTCATTTTTTCTTCGTTGAAAGGCAGCACTTCCGACATCTCCAAATGCGTCTTTATCAACAAGGCGCACAAACTAAAATGTATAGCTCGTCGCCAAGCGAGAACTCGGTCGTCTATAACAAACAAAAGGAGTGAAGAAAATAATGCAATCTGCAGACACGATCGAGCCCTTTGTGTTTACCCCGAAGACACGTGTCTGTCTCCGCAGGTACGCAACAGAAATGACAGTAGGCTAAATCAAAATGTCCTCAATTTTCCACACTCGTGAAGCTTCAGCAACGTTATTCAAAATttccagagtgtttttttctccgCGCGTATTGCTTTGGAAATGGAGGCGCACGTACAATAGAGCCGTGGAGCGCCCGCTGGATTCGAGCGGCTGAACCGGTCGCACGGAAAATCTGAGGAAGAAATGCAAATTGAGGAGCGATGCAAAACACGGATCCCGGGGAGCCCTGGCGAGGGAACTGTACGGGGGTTTTCTGGTGCAGCCCAGAGAAGCTTCCAGTTGGAGTAGCGGTGTACCAATGCTCCACTCTCCAGGGTCTAGATGCAATCTAATGGCGACTTTATATTCAGGGTGGCACATACATAAACCAATACAGATCTATGGAGTACGTCGTTTACGCGCCACCACTCGGAGAGTAGGCTAAGGCTACAGATGTGAAATCTTCCAACCTgttttacaatttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50722 lncRNA upstream 14476 12681128 ~ 12682749 (+) True G37783
TU50715 lncRNA upstream 35240 12661771 ~ 12661985 (+) True G37778
TU50705 lncRNA upstream 90563 12603798 ~ 12606662 (+) True G37769
TU50703 lncRNA upstream 97554 12599440 ~ 12599671 (+) True G37768
TU50696 lncRNA upstream 111414 12584657 ~ 12585811 (+) True G37761
TU50883 lncRNA downstream 48542 12749221 ~ 12752281 (+) False tmem167b
TU50970 lncRNA downstream 213391 12914070 ~ 12914413 (+) True G37966
TU50974 lncRNA downstream 362655 13063334 ~ 13064366 (+) True G37970
TU50982 lncRNA downstream 369492 13070171 ~ 13071870 (+) True G37978
TU50984 lncRNA downstream 371295 13071974 ~ 13072825 (+) True G37980
XM_039796315.1 mRNA upstream 22266 12660513 ~ 12674959 (+) True pusl1
XM_039797925.1 mRNA upstream 114821 12561829 ~ 12582404 (+) False hipk1b
XM_039798509.1 mRNA downstream 10806 12711485 ~ 12715490 (+) True LOC120557860
XM_039797395.1 mRNA downstream 15499 12716178 ~ 12719493 (+) True cdab
XM_039797394.1 mRNA downstream 33847 12734526 ~ 12738534 (+) False b3galt6
XM_039797390.1 mRNA downstream 35189 12735868 ~ 12738534 (+) True b3galt6
XM_039797391.1 mRNA downstream 35189 12735868 ~ 12738534 (+) False b3galt6
TU50647 other upstream 310050 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 418601 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 442251 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 891831 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1302891 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 15481 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 35188 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 124850 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 491099 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 492568 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile