Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_039796315.1 |
| length | 1180 |
| RNA type | mRNA |
| GC content | 0.53 |
| exon number | 8 |
| gene id | pusl1 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_053115.1 |
| NCBI id | CM020912.1 |
| chromosome length | 44863486 |
| location | 12660513 ~ 12674959 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| species | eurasian perch (Perca fluviatilis) |
| id | name | namespace |
|---|---|---|
| GO:0001522 | pseudouridine synthesis | biological_process |
| GO:0008033 | tRNA processing | biological_process |
| GO:0003723 | RNA binding | molecular_function |
| GO:0009982 | pseudouridine synthase activity | molecular_function |
| id | description |
|---|---|
| K06173 | truA, PUS1; tRNA pseudouridine38-40 synthase |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU50705 | lncRNA | upstream | 53851 | 12603798 ~ 12606662 (+) | True | G37769 |
| TU50703 | lncRNA | upstream | 60842 | 12599440 ~ 12599671 (+) | True | G37768 |
| TU50696 | lncRNA | upstream | 74702 | 12584657 ~ 12585811 (+) | True | G37761 |
| TU50675 | lncRNA | upstream | 209965 | 12450052 ~ 12450548 (+) | True | G37742 |
| TU50646 | lncRNA | upstream | 274867 | 12385390 ~ 12385646 (+) | True | G37729 |
| TU50722 | lncRNA | downstream | 6169 | 12681128 ~ 12682749 (+) | True | G37783 |
| TU50860 | lncRNA | downstream | 22266 | 12697225 ~ 12700679 (+) | True | G37882 |
| TU50883 | lncRNA | downstream | 74262 | 12749221 ~ 12752281 (+) | False | tmem167b |
| TU50970 | lncRNA | downstream | 239111 | 12914070 ~ 12914413 (+) | True | G37966 |
| TU50974 | lncRNA | downstream | 388375 | 13063334 ~ 13064366 (+) | True | G37970 |
| XM_039797923.1 | mRNA | upstream | 78109 | 12561829 ~ 12582404 (+) | True | hipk1b |
| XM_039797925.1 | mRNA | upstream | 78109 | 12561829 ~ 12582404 (+) | False | hipk1b |
| XM_039797926.1 | mRNA | upstream | 78109 | 12561829 ~ 12582404 (+) | False | hipk1b |
| XM_039797927.1 | mRNA | upstream | 78109 | 12561829 ~ 12582404 (+) | False | hipk1b |
| XM_039797924.1 | mRNA | upstream | 78109 | 12565133 ~ 12582404 (+) | False | hipk1b |
| XM_039798509.1 | mRNA | downstream | 36526 | 12711485 ~ 12715490 (+) | True | LOC120557860 |
| XM_039797395.1 | mRNA | downstream | 41219 | 12716178 ~ 12719493 (+) | True | cdab |
| XM_039797394.1 | mRNA | downstream | 59567 | 12734526 ~ 12738534 (+) | False | b3galt6 |
| XM_039797390.1 | mRNA | downstream | 60909 | 12735868 ~ 12738534 (+) | True | b3galt6 |
| XM_039797391.1 | mRNA | downstream | 60909 | 12735868 ~ 12738534 (+) | False | b3galt6 |
| TU50647 | other | upstream | 273338 | 12386171 ~ 12387175 (+) | True | G37730 |
| XR_005639029.1 | other | upstream | 381889 | 12274760 ~ 12278624 (+) | True | LOC120557851 |
| TU50615 | other | upstream | 405539 | 12253066 ~ 12254974 (+) | True | G37714 |
| TU50430 | other | upstream | 855119 | 11780178 ~ 11805394 (+) | True | G37597 |
| TU50377 | other | upstream | 1266179 | 11390739 ~ 11394334 (+) | False | LOC120557336 |
| TU50865 | other | downstream | 41201 | 12716160 ~ 12719472 (+) | False | cdab |
| XR_005638946.1 | other | downstream | 60908 | 12735867 ~ 12741048 (+) | False | b3galt6 |
| TU50929 | other | downstream | 150570 | 12825529 ~ 12857413 (+) | False | kif21b |
| XR_005639082.1 | other | downstream | 516819 | 13191778 ~ 13191911 (+) | True | LOC120558254 |
| XR_005639080.1 | other | downstream | 518288 | 13193247 ~ 13193320 (+) | True | LOC120558251 |
