RNA id: TU50883


Basic Information

Item Value
RNA id TU50883
length 1427
lncRNA type sense_over
GC content 0.41
exon number 3
gene id tmem167b
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12749208 ~ 12752285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agccagTGAAACCGGAAATGTCAACCGAGTGACTGCGAAGCGAATAAGAGACTGCATTATTATAACTCTAGCTACTTTATATAACATGATGGATTGCTAATTTAAAGGAAGAAGCAGTCATAATAAATCGTCAGAGAGCAAACTGCGAATATGACAAATGTGTACTCTTTTGATGGCATCCTGGTGTTCGGCCTGCTGTTCATCTGCACTTGTGCATACCTCAAAAAGGTGCCTCGCCTCAACAACTGGCTGCTATCAGAGAAGAAAGGAGTGTGGGGCGTCTTCTATAAAGCTGCGGTAATTGGGACGCGGCTTCACATTGCCGTGGCAATTTCCTGTTTGGGCATGGCGTTCTACATTGTCTTCTTGAAATGATAGAGTCAGACTGGACTAAAAAGGACCAGACGGGTGCAGGCGGGGGATGGACTCCTCTCTGTGGTCATGTACTAATCCTTGTTGGGGAGAAACCTCTTGGATTACGTGACTGATGAAACCCCATTGGCCCTGTGGATCCATGTGAAAGACTAGCCAGTGCTTCCCCCTTCTGGTGACTGGGTACATAATTCCTCCCTTGATGTGTGTGCACACTGCACTACAGACATGACGGGCATCCGGAATCAACTCCACAGTTGTTACAGAGGAGAGAGCCAGTTCGGTCTCTTTTTATCATTGTATTGTAGGGTAACACTGTTGGTTGTCTCCATCCACACCCCATGCATATTTATATTAAAGGATGCAGAAGATTGAAGGGCAGTGTGTGCATTGTACCGTATACCTGTATACAACCTAAAATTAGCCTAGCTGTATATATTTGGAAAAAGATATGACCAATAGAGATTTGCCAGAGGTTATGTGTGATCAAACTGAAAATGATCTATTCTGCTTGCTCCCAGCTATGCTGTTTTTTCTGTATCACCTCTTGTGTCAAGGGTGAGGGGAAGATAAACAAAGCTAATATATAAAGATGTTCTTGTGtactactttacttttttttgggATCTCTTACTTTTCCTCAACAGTGCTGTTTGGCATCTCTTAAGCTTTGTTTTAGGTTTGAAATACACATTTTGCACAGGTGTATGTTGTATTTACGACATTGCCATCTAATAATAGTTAACATGTCACAAATTGTTACAAATTGAACTGTAAGACACGTAGGATTCAAAGTTCTACCACAACTGTAGAGTATCGCAGAGAGAATAATTTTTCGAAGAGTCGTATCTCAAcatactgttaaaaaaatataatagcTATATCAGACCCGCCTGAATATTTAAATGCAATGCCAAATAGGGACGGTGCTTCTCATGTCTATAAATTACATACTGTTATTCTGAGTTTAATTCTGCCAccttatttcatatttttaaaagAAGACATTGTTTTGATAGGGGATGCAATGCAATTTTCAGTAAAACATTAACCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50860 lncRNA upstream 48542 12697225 ~ 12700679 (+) True G37882
TU50722 lncRNA upstream 66472 12681128 ~ 12682749 (+) True G37783
TU50715 lncRNA upstream 87236 12661771 ~ 12661985 (+) True G37778
TU50705 lncRNA upstream 142559 12603798 ~ 12606662 (+) True G37769
TU50703 lncRNA upstream 149550 12599440 ~ 12599671 (+) True G37768
TU50970 lncRNA downstream 161789 12914070 ~ 12914413 (+) True G37966
TU50974 lncRNA downstream 311053 13063334 ~ 13064366 (+) True G37970
TU50982 lncRNA downstream 317890 13070171 ~ 13071870 (+) True G37978
TU50984 lncRNA downstream 319693 13071974 ~ 13072825 (+) True G37980
XR_005638901.1 lncRNA downstream 323138 13075419 ~ 13079887 (+) True LOC120556864
XM_039797394.1 mRNA upstream 10687 12734526 ~ 12738534 (+) False b3galt6
XM_039797390.1 mRNA upstream 10687 12735868 ~ 12738534 (+) True b3galt6
XM_039797391.1 mRNA upstream 10687 12735868 ~ 12738534 (+) False b3galt6
XM_039797393.1 mRNA upstream 10687 12736461 ~ 12738534 (+) False b3galt6
XM_039797392.1 mRNA upstream 10687 12736461 ~ 12738534 (+) False b3galt6
XM_039796939.1 mRNA downstream 2230 12754511 ~ 12776399 (+) True mapk14b
XM_039796938.1 mRNA downstream 2238 12754519 ~ 12776399 (+) False mapk14b
XM_039796936.1 mRNA downstream 24590 12776871 ~ 12809790 (+) False srpk1b
XM_039796934.1 mRNA downstream 29879 12782160 ~ 12809790 (+) False srpk1b
XM_039796937.1 mRNA downstream 37067 12789348 ~ 12809790 (+) True srpk1b
XR_005638946.1 other upstream 8173 12735867 ~ 12741048 (+) False b3galt6
TU50865 other upstream 29749 12716160 ~ 12719472 (+) False cdab
TU50647 other upstream 362046 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 470597 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 494247 12253066 ~ 12254974 (+) True G37714
TU50929 other downstream 73248 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 439497 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 440966 13193247 ~ 13193320 (+) True LOC120558251
TU51031 other downstream 453203 13205484 ~ 13208258 (+) False spcs1
unassigned_transcript_200 other downstream 533958 13286239 ~ 13286311 (+) True trnar-acg_15

Expression Profile