RNA id: XM_039797390.1


Basic Information

Item Value
RNA id XM_039797390.1
length 2173
RNA type mRNA
GC content 0.46
exon number 2
gene id b3galt6
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12734526 ~ 12741048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATAATATCagttataaaaagaaaacaaaaatagttGTCCATATGAGTGTTTATTTTGCGAAACTTTAATTCCCTTCTTACGTGGGCTTCACTTCCGTTTCCTCTTCGTCACTGCCACACAAAAGTGACTGGTTCAACGCGGTTCGACCAATGGGTTCAACGCAACGTTAcaccaaaagacaaaaaaaaaaagaatacatcgACACCGCTCAACAACTCGCCCAGCGAACGATTTAACCTGCTGTTTGTAACCTTGCCTGACCGACGCCGCTAAGCGTAGTGTTTTTCATCTCCTGTTTAGACCAATATGagcagcctgtgtgtgtttgcattcagAGGAGTGAGCTTACAAAGTACGCAGAGGGTCTTATCTCGGTAGCTAGCGTTAGCCCTGCACAGCTGCCATCTGTGGCCCGCTCTGGCTGTATCAATCACGGCAAAGGGTACTTTTCAATTAGCTACGGTAAATTAACAAATCCTCTGTAATTTATTACTGCTTACGTACACACAGTGTAACGTTACAGTTGAACTACTAGCTAAGCTTAGCAAGCAGGTGGTGCTACAAAGTCATGGGTGTGCAGCTGAGATTCAGCACCATGAATCTGTTACGTCTAGTATGCCGCCACAAGACAGCCCTGGTCATTGGCACTGTGTGCAGCTTTGCTGTCGTTCTGGTCTTCTTGGCCAAATGTACCTCAGAAACCCTGAAACAGGGCCACCAGGATCCTCCAGGCTTAGCCCCTCATGCCAGTGCTTTGCAATCCCGTCCAGAGCAGCACAATCCCCCTTCCACATCCAAAGAATTGTCAGCATTCCTCGTGGTCCTCATCACAACCGGACCGAAGTACACAGAGCGGCGGAGTATCATCCGCAGCACCTGGCTGGCCAAGCGGGACTCTGATGTTCTGGCTATGTTTGTGGTGGGAACTCAGGGACTTTCCAACGAGGACCATCAGAACCTTAACACAGAGCAAGGGAGGCACAAGGACTTGCTCTTACTGCCTGAGTTGCGAGATTCTTACGAGAACTTAACACTCAAGCTGCTGCACATGTACACCTGGCTGGACCAGAATGTAGAGTTCAAGTTTGTCCTTAAAGCAGATGATGACACATTTGCTCGCTTGGACCTCCTTAAGGAGGAGCTAAAGGGGAAAGAGCCCAACCAGTTCTATTGGGGCTTCTTCTCAGGGAGAGGGCGGGTGAAAACAGCTGGGAAGTGGCGGGAAAGCTCTTGGGAGCTTTGTGACTACTACCTGCCCTACGCACTGGGTGGGGGCTACATCCTCTCGGCTGACTTAGTACGTTATGTGCATCTTAACGCAGGCTACTTCAAGATGTGGCAGAGTGAGGATGTGTCACTGGGCGCCTGGCTGGCGCCAGTGGATGTTCGTCGGACGCATGACCCACGCTTTGACACGGAGTATAAATCGCGTGGTTGCAACAACAAATACTTGGTGACGCATAAGCAGAGCTTGGAGGACATGTTGGAAAAACACCAGACCCTGCAGCGCGATGGCAGGCTCTGCAAGGAGGAAGTCAAGCTGCGGCTGTCCTATGTGTATGACTGGAGTGTGCCACCCTCACAGTGCTGCCAAAGGAAGGATGGCATTCCTTAATGTTTGTCCTTTTTACAAGGCCCTGAAGTTGTCTCCTGATTTGTCTGATGGATTCTTCCGAGTCAGAAAGAAGTAAGGGAATAATGTTTTTCGACCAATTCTCTAGTGATGCACAATTTAAAGTTATGTAACAGGTTCcagaaaacaaagcaaatgcCTTAATGTTGATAGAAACCCCATTCCAGATTTGGAAAACCTTTTTTACTaattgtgaaaacaaaaaaggacaatTCCACTGATTTTACATCACGTAGGAGCAGGTCTGAGCTCAGTCTTTAGAGTTTTAATGTTAATTTAGAATAggtttgacaaataaaaaaatatggccctggtccaatgtggtctggATAGAGGAAAAGAAATGACATTTCAGTCTCTCAACTCTGGTATGTGTCATGCGTTTGTGATGCAGAGCAGGTAATGAAATCACCTTTTTCCACCTGTTTTTCGCAAATAgaatgttttaaagtgctcatattatgctcattttcaggttcataattgtatttagaggttgtaccagaataggtttatgtggtttaattttctaaaccactt

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG:

id description
K00734 B3GALT6; galactosylxylosylprotein 3-beta-galactosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50860 lncRNA upstream 35189 12697225 ~ 12700679 (+) True G37882
TU50722 lncRNA upstream 53119 12681128 ~ 12682749 (+) True G37783
TU50715 lncRNA upstream 73883 12661771 ~ 12661985 (+) True G37778
TU50705 lncRNA upstream 129206 12603798 ~ 12606662 (+) True G37769
TU50703 lncRNA upstream 136197 12599440 ~ 12599671 (+) True G37768
TU50883 lncRNA downstream 10687 12749221 ~ 12752281 (+) False tmem167b
TU50970 lncRNA downstream 175536 12914070 ~ 12914413 (+) True G37966
TU50974 lncRNA downstream 324800 13063334 ~ 13064366 (+) True G37970
TU50982 lncRNA downstream 331637 13070171 ~ 13071870 (+) True G37978
TU50984 lncRNA downstream 333440 13071974 ~ 13072825 (+) True G37980
XM_039797395.1 mRNA upstream 16375 12716178 ~ 12719493 (+) True cdab
XM_039798509.1 mRNA upstream 20378 12711485 ~ 12715490 (+) True LOC120557860
XM_039796315.1 mRNA upstream 60909 12660513 ~ 12674959 (+) True pusl1
XM_039797927.1 mRNA upstream 153464 12561829 ~ 12582404 (+) False hipk1b
XM_039799078.1 mRNA downstream 10674 12749208 ~ 12752285 (+) True tmem167b
XM_039796939.1 mRNA downstream 15977 12754511 ~ 12776399 (+) True mapk14b
XM_039796938.1 mRNA downstream 15985 12754519 ~ 12776399 (+) False mapk14b
XM_039796936.1 mRNA downstream 38337 12776871 ~ 12809790 (+) False srpk1b
XM_039796934.1 mRNA downstream 43626 12782160 ~ 12809790 (+) False srpk1b
TU50865 other upstream 16396 12716160 ~ 12719472 (+) False cdab
TU50647 other upstream 348693 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 457244 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 480894 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 930474 11780178 ~ 11805394 (+) True G37597
TU50929 other downstream 86995 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 453244 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 454713 13193247 ~ 13193320 (+) True LOC120558251
TU51031 other downstream 466950 13205484 ~ 13208258 (+) False spcs1
unassigned_transcript_200 other downstream 547705 13286239 ~ 13286311 (+) True trnar-acg_15

Expression Profile