RNA id: XM_039798509.1


Basic Information

Item Value
RNA id XM_039798509.1
length 762
RNA type mRNA
GC content 0.53
exon number 5
gene id LOC120557860
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12711485 ~ 12715490 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGAGCCTGGCTCCATCCTGTCACCTCTCATTGCTCCTTCTGCTCGTTGCAAACCTATCAGATTCGTACGAGGACAGAATCATCGGGGGTGCAGAGGTACAGCCCTACTCCATCAAGCACCAAGCCTCCCTCCAGTTCATGAACTACCACTTCTGTGGAGGCACCCTCATCCACCCGCAGTGGGTGGTGTCTGCTGCCCACTGCTGGAGACCGAGTCAGCTGATCCAAGTGGCCCTGGGTGAGCACAACATCATCGAGGTGGAGGGCTTTGAACAGAGGTTCAACGTCTCTTTAGTCGTCAAGCACTACGAGTACCAACCCTGGATATTTGACAATGATATCATGCTGCTTAAGTTGGACCGTCCAGCTATCATCAACGCCAGGGTCGAGCCAGCCTCTTTGCCAGACCCAGACTCACCGCCCTTGGCCAACCTTGCCCGGTGCACAGTCAGCGGCTGGGGTGTAACCTGGCTCAACAGCTACATGTTGTCACCTGTACTGAGGTCTGTGGATGTGGACATCATCAACAACTGCtggtactactactacttcagGATCACTAAGAACATGGTCTGTGCTGGCTCTCTCTATGGTGGGAAAGACTCCTGTCAGGGTGACTCAGGGGGACCTCTTGTTTGTAATGGTAAATATGAGGGCATTGTATCTTGGGGCATCGGCTGTGCCGATGCTTACTACCCCGGCGTCTACACCAAGGTCAGAAACTACCTCGGATGGATCAACTGggtcacacagaacaactaa

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004252 serine-type endopeptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50860 lncRNA upstream 10806 12697225 ~ 12700679 (+) True G37882
TU50722 lncRNA upstream 28736 12681128 ~ 12682749 (+) True G37783
TU50715 lncRNA upstream 49500 12661771 ~ 12661985 (+) True G37778
TU50705 lncRNA upstream 104823 12603798 ~ 12606662 (+) True G37769
TU50703 lncRNA upstream 111814 12599440 ~ 12599671 (+) True G37768
TU50883 lncRNA downstream 33731 12749221 ~ 12752281 (+) False tmem167b
TU50970 lncRNA downstream 198580 12914070 ~ 12914413 (+) True G37966
TU50974 lncRNA downstream 347844 13063334 ~ 13064366 (+) True G37970
TU50982 lncRNA downstream 354681 13070171 ~ 13071870 (+) True G37978
TU50984 lncRNA downstream 356484 13071974 ~ 13072825 (+) True G37980
XM_039796315.1 mRNA upstream 36526 12660513 ~ 12674959 (+) True pusl1
XM_039797923.1 mRNA upstream 129081 12561829 ~ 12582404 (+) True hipk1b
XM_039797395.1 mRNA downstream 688 12716178 ~ 12719493 (+) True cdab
XM_039797394.1 mRNA downstream 19036 12734526 ~ 12738534 (+) False b3galt6
XM_039797390.1 mRNA downstream 20378 12735868 ~ 12738534 (+) True b3galt6
XM_039797391.1 mRNA downstream 20378 12735868 ~ 12738534 (+) False b3galt6
XM_039797393.1 mRNA downstream 20971 12736461 ~ 12738534 (+) False b3galt6
TU50647 other upstream 324310 12386171 ~ 12387175 (+) True G37730
XR_005639029.1 other upstream 432861 12274760 ~ 12278624 (+) True LOC120557851
TU50615 other upstream 456511 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 906091 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 1317151 11390739 ~ 11394334 (+) False LOC120557336
TU50865 other downstream 670 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 20377 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 110039 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 476288 13191778 ~ 13191911 (+) True LOC120558254
XR_005639080.1 other downstream 477757 13193247 ~ 13193320 (+) True LOC120558251

Expression Profile