RNA id: TU50615


Basic Information

Item Value
RNA id TU50615
length 890
RNA type TUCP
GC content 0.45
exon number 2
gene id G37714
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12253066 ~ 12254974 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

taaaatacAGTTTGAAGATTTATTGTCGAGCAAACAGGACTCCAGGTATTGACAACAGTTGCAGAAGTCGTGAAGACTTTTGTGAcagatttttcattttatttaactgtTTAAGTACAGCAGGTTTAGCATAAGATTTGTTTTCCCCACATTACCCCTATCAGCAGTATGATATTAAGTTGATGTGACATTAGTGCTTTGAGTTCctcaaacaacaacatagagcagcagaggaaaacataatacaacacTGCCACCTGCTGGCTAAACAAGTGTGATGCAGGGAATCATGGGCAGTGACAAAGCCTACAGCTGACAGTAAAGAATGTATTACAGTAAAAGTTTTCAGAAACCTGAACAAAGACTCATCCATTAGCACCTCTTTATTAAGGATACCTGAACGAATAGACCTCTTACAGCAGAAAAGTATTTGGTGAAGGCACCTTGGTGATGGAATCATTCAAGAACTTGATAATAAAAGCAAAGTCTGGGTCCTTTTCCTTAACTTCCGAGATCAAAATCTTCAATCATACATCCGACAAAACAGGAACAAACACATCACTCCTCAGCCACAACTTCTGCCTCCGCCTGCTCctgctcctccttctcttcagCAGCTGGCTCCTCGGTtgctgtctgctgctgctgctcctcctgctccttcttctcctcctccttcttctcctccgtcTTGATCACCACTGTTTCTGTCTTGGTGACTGTGGCGCTCTTCACTGTTGCTCCCTCGAGGACAGCGACAGAACCACTGCTGGCCCTGTCTCCCCCGAAGGAGCAGCTGACGTAGGACGGGGTTCGGGAGCTCTCCAGGCCGTAGGCATTATAGTTTACAGAAGTGTGCTTGGATATATTGGTCTTGATTCCAGTTGCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638918.1 lncRNA upstream 87421 12152765 ~ 12165645 (+) True LOC120556983
TU50577 lncRNA upstream 142278 12109304 ~ 12110788 (+) True G37691
XR_005638970.1 lncRNA upstream 228329 12024330 ~ 12024737 (+) True LOC120557465
TU50441 lncRNA upstream 390096 11861473 ~ 11862970 (+) True G37606
TU50427 lncRNA upstream 395369 11775341 ~ 11857697 (+) True G37595
TU50620 lncRNA downstream 45276 12300250 ~ 12300495 (+) True G37718
TU50642 lncRNA downstream 128482 12383456 ~ 12383735 (+) True G37725
TU50645 lncRNA downstream 130017 12384991 ~ 12385216 (+) True G37728
TU50646 lncRNA downstream 130416 12385390 ~ 12385646 (+) True G37729
TU50675 lncRNA downstream 195078 12450052 ~ 12450548 (+) True G37742
XM_039798915.1 mRNA upstream 125356 12114008 ~ 12127710 (+) True tgm2b
XM_039798726.1 mRNA upstream 141225 12081105 ~ 12111841 (+) True LOC120557971
XM_039797802.1 mRNA upstream 347312 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA upstream 347312 11900776 ~ 11905754 (+) True myl9b
XM_039797570.1 mRNA upstream 858668 11385184 ~ 11394398 (+) True LOC120557336
XM_039798481.1 mRNA downstream 19787 12274761 ~ 12278624 (+) False LOC120557851
XM_039798488.1 mRNA downstream 26703 12281677 ~ 12296149 (+) False eif4ba
XM_039798487.1 mRNA downstream 26797 12281771 ~ 12296149 (+) False eif4ba
XM_039798482.1 mRNA downstream 28147 12283121 ~ 12297035 (+) True eif4ba
XM_039798489.1 mRNA downstream 28147 12283121 ~ 12297035 (+) False eif4ba
TU50430 other upstream 447672 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 858732 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 900679 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 1254929 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1943070 10305187 ~ 10309996 (+) True G37197
XR_005639029.1 other downstream 19786 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 131197 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 461186 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 480893 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 570555 12825529 ~ 12857413 (+) False kif21b

Expression Profile