RNA id: TU50427


Basic Information

Item Value
RNA id TU50427
length 1387
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id G37595
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11775341 ~ 11857697 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aaaaaaaaaagaaaaaaaaaaagataggcagaaaaagaaaaactttgcaACAACAAGCCCTTTGCGCCAAGCAGATCTGAACTAGATATGCTGATATGGAATGAGGGCATGTCTATTTGGACTCCACAAAAAAGGTTTCTGCACGTTTGTTGTTCAAATCCCACACGTAATAACACATCCTTAATGACTATGAAGCTAACAAATGTGCTTTCAGTAGCAGGAATGATTAATCgggtataagaaattaaagcaAAAGCCCCAAATTTACAAAAGAGAGCGAGCTAATAGCTGGGACACAATTTGTGATTTGCCCTCGAGTCTCAGCCATTCCTGGCAGAGAGCGTTACATATGGTTTGTGATCTTTAGCGTAACTGCAATGCCTGTATTTAGGAGTTACCGATTTCCTTATCATATTCCAGTGACACACATCACGCCAACACGTTTCACATGTTCACAGGAGGGACAGTGCCTATTTCAGAAGACAAAGTACGCCTATCAAAATGAGTTAGCACTGGTCCTTCCCCTAGAGGCATGGtgattcagtaaaaaaaaatgtttagccAGTTGGGTCGTAAATCTAATCCAAGGCAACAGATAATAAAGTCAGTTGAGAGGCTGTTACTCAAAGCTTTTAGTGAGAGGAATGTACAGATGTTGAGTTGCCATCAAAAGAATGTTAGATCTTTAAAGACTTGGTTAGTTAAAATGGGGTTAAAACTTCATTATTGAGGATTGAGCAGTTGACGAATGATGCTGGAATGACAGAAAACGAACCTGTTGAACAGAATCAATAGTAAAGAGTCTGTCGGGGCCACAATCACAGACAGTACTCCTAGTGTGGAGCTACAGCAGCAGTGCACTCTGGCAACACTGTTACAAAAGCAGTTGCTAAATTCACAGTCCTCCAGATAATTGGCTAGCAAAGGCCTCTCCTTAAGTGTCCACTTGTTAACTTATCCTGGCGTCAAAGCACGACCAAGAATACCCATTCATGGTGTCCAACTACtttgttctgcttttttttttggccaacTCCTCTGATCGCCACCCTGCATTACACACTATACACGCACAACATTTAAGTCCAGCTGTATAACCACCTCTCTTCTTCCATTCATTCACGCGTTGATAGGTCTCCAGCGGTCAGCTTCAGTGCTGTTAATGCTGCTGGACCCATAGGGTCCGGAGGCAACATCATCCAGGTATGCTCCAACCATACGAGAGCTGCCGGGACCAGAGCCATCGATCTGGGTGGAGGAGTAAAACAGGCCTTGGTCAGTCAGCTCCTTACGGCCAAGGGTCGTAGCGATGGTGGGGGGAAGGTGGACGTCACTTTCATCCGGCTCATCCACCTGTGACTTGTAGGAGAACAGGATCTTGGGCTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50419 lncRNA upstream 99313 11659300 ~ 11676028 (+) True G37588
TU50397 lncRNA upstream 260253 11514762 ~ 11515088 (+) True G37567
TU50391 lncRNA upstream 352442 11422242 ~ 11422899 (+) True G37561
TU50390 lncRNA upstream 353619 11421523 ~ 11421722 (+) True G37560
TU50383 lncRNA upstream 358990 11407976 ~ 11416351 (+) True G37553
TU50441 lncRNA downstream 3776 11861473 ~ 11862970 (+) True G37606
XR_005638970.1 lncRNA downstream 166633 12024330 ~ 12024737 (+) True LOC120557465
TU50577 lncRNA downstream 251607 12109304 ~ 12110788 (+) True G37691
XR_005638918.1 lncRNA downstream 295068 12152765 ~ 12165645 (+) True LOC120556983
TU50620 lncRNA downstream 442553 12300250 ~ 12300495 (+) True G37718
XM_039797570.1 mRNA upstream 380943 11385184 ~ 11394398 (+) True LOC120557336
XM_039797569.1 mRNA upstream 393161 11376535 ~ 11382180 (+) True LOC120557335
XM_039797567.1 mRNA upstream 399529 11361406 ~ 11375812 (+) True LOC120557333
XM_039796527.1 mRNA upstream 442695 11330556 ~ 11332646 (+) True msx1a
XM_039799019.1 mRNA upstream 509271 11263510 ~ 11266070 (+) True LOC120558115
XM_039797802.1 mRNA downstream 35893 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA downstream 43079 11900776 ~ 11905754 (+) True myl9b
XM_039798726.1 mRNA downstream 223408 12081105 ~ 12111841 (+) True LOC120557971
XM_039798915.1 mRNA downstream 256311 12114008 ~ 12127710 (+) True tgm2b
XM_039798481.1 mRNA downstream 417064 12274761 ~ 12278624 (+) False LOC120557851
TU50377 other upstream 381007 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 422954 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 777204 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1465345 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2952610 8822660 ~ 8822731 (+) True trnae-cuc_13
TU50615 other downstream 395369 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 417063 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 528474 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 858463 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 878170 12735867 ~ 12741048 (+) False b3galt6

Expression Profile