RNA id: TU50397


Basic Information

Item Value
RNA id TU50397
length 280
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G37567
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11514762 ~ 11515088 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gcaggtagatctggagcagatggttgtagtctgtagccagccatacagcaggtagatctggagcagatggttgtagtctgtagccagacatacagcaggtagatctggagcagatggttgtagtctgtagccagccatacagtaggtagatctggagtagcagggtgaattctagctatcatgggttggtgatatgacacacagatcaacaggggtcaaacccctcagccccacctggatgaaaagaaagtaaaacaaaatacttgttttttcagttcag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50391 lncRNA upstream 91863 11422242 ~ 11422899 (+) True G37561
TU50390 lncRNA upstream 93040 11421523 ~ 11421722 (+) True G37560
TU50383 lncRNA upstream 98411 11407976 ~ 11416351 (+) True G37553
TU50351 lncRNA upstream 154514 11359773 ~ 11360248 (+) True G37528
TU50349 lncRNA upstream 158402 11355629 ~ 11356360 (+) True G37527
TU50419 lncRNA downstream 144212 11659300 ~ 11676028 (+) True G37588
TU50427 lncRNA downstream 260253 11775341 ~ 11857697 (+) True G37595
TU50441 lncRNA downstream 346385 11861473 ~ 11862970 (+) True G37606
XR_005638970.1 lncRNA downstream 509242 12024330 ~ 12024737 (+) True LOC120557465
TU50577 lncRNA downstream 594216 12109304 ~ 12110788 (+) True G37691
XM_039797570.1 mRNA upstream 120364 11385184 ~ 11394398 (+) True LOC120557336
XM_039797569.1 mRNA upstream 132582 11376535 ~ 11382180 (+) True LOC120557335
XM_039797567.1 mRNA upstream 138950 11361406 ~ 11375812 (+) True LOC120557333
XM_039796527.1 mRNA upstream 182116 11330556 ~ 11332646 (+) True msx1a
XM_039799019.1 mRNA upstream 248692 11263510 ~ 11266070 (+) True LOC120558115
XM_039797802.1 mRNA downstream 378502 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA downstream 385688 11900776 ~ 11905754 (+) True myl9b
XM_039798726.1 mRNA downstream 566017 12081105 ~ 12111841 (+) True LOC120557971
XM_039798915.1 mRNA downstream 598920 12114008 ~ 12127710 (+) True tgm2b
XM_039798481.1 mRNA downstream 759673 12274761 ~ 12278624 (+) False LOC120557851
TU50377 other upstream 120428 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 162375 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 516625 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1204766 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2692031 8822660 ~ 8822731 (+) True trnae-cuc_13
TU50430 other downstream 265090 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 737978 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 759672 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 871083 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 1201072 12716160 ~ 12719472 (+) False cdab

Expression Profile