RNA id: XM_039798481.1


Basic Information

Item Value
RNA id XM_039798481.1
length 1602
RNA type mRNA
GC content 0.49
exon number 7
gene id LOC120557851
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 12274760 ~ 12278624 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCACTGCCAgcgtcacttttttttaagccaGCCAGCAGTGAGTCTCCACATCTCATTtttcacttcattttctgcagtgCCTAAACTTCTCCAAAATGAACTTCGGAAGATCCACCACACAGCAGATACCTTCTTCCCGCCTCTCCTTGACCCGCTCCACACCCCAGCGGGCTGCCAGCATGTATGCAGGTTCTGGTGGACATAGCAGCCGCATTTCCTCTGTCTCCGCATCTTCCCTGCGGTCTGGTGCCCCAATGACCTCTTCTTCATCTGCCTTCAAGCTGAGCAGTGGAATGGGTGGGGGTATGGGTTCAGGTTTTGGTAGTGCCGGTGTGTCTATGTCGACTGGTGGTGGTGCCGGTGCTGGGATCATGGGCAACGAGAGGGGAGCCATGCAGAACCTAAACGACCGCCTGGCTAACTACCTGGAGACGGTGAGAAACCTGGAACAGGCCAACAAGGAGCTGGAGATGAAAATCATGGAGGCTCTGGAGAAGGGAGGGCCTGACGTGAGAGACTACAGCAAGTATCAACCCATCGTAGATGACCTACGCAAACAGaTCTTTGATAAGATTGCGGAAAACGCTCGTTTTGTGCTCCAGATCGACAATGCCCGTCTTGCTGCTGACGACTTCAAAGTCAAGTTCGACAATGAGATGGCAATCCGCCAGTCTGTGGAGGCCGACATCGCTGGGCTGAAGAAACTCATAGATGACACCAACATGACCAGAATGAACATCGAGAACGAGATTGAAGCTGTGAGGGAGGAGCTCGCCTTCCTTAAGAAGAACCATGAAAATGAAGTGATGGAGCTGAGGAATCAGATTTCTCAGTCAGGCGTGCAAGTGGATGTTGACGCTCCCAAAGGCAACGACTTGGCCCAGATCATGGAGGACGTGAGGGGCAGTTATGAGAAGATTGTCGTGAAGAACGCAGAAGAACTTAAACGATGGCATGAAAATCAGATTGCGGATGTGCAGGTGGAGGTATCACAGAACACAGAAGCTCTCCAAGGAGCCCAAATGGAGAGGGGTGACTTATCCAGACAGATACAGACCCTGGAAATTGAACTTGCATCTCAACAGAGCTTAAAAGCTTCCTTGGAGGATACATTACGCAACACAGAACAACGAAACAACATGGAAATGGAGAAGTACAACAGCATTATTATCCGTCTGGAAGAGGAGCTGACCAACTTGCGTTCAAACATCCAGCATCAGACCCAAGAGTATGAGGCGCTGCTCAACATGAAGATGAAACTGGAGGCTGAGATTGGCACTTACAAGAATCTGCTGGATGGTGAAGCGTTCAAGCTCCAGGATGCACTGGATGAGCTGGTGGACGCAAGCTAATTTGGAACAAAGAATCTGGGACCATCCCAACAACCCACAACTAtccattatggaaaaaaaaatacattctgGTCCAATCAACTAAAGTCAATTTTGAACCAAGACCACATTCTGTGTAAACCGTAAAGGATTTCAGCAATTCTGAATAAAGGCATTCGACCACAGTAAAGCAGGCAGGGCCATTTGAAATGCAACCATTGCCTGAACTgacagcaaaataaaaataaatgaaaccaCTTGTTGACCCACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005638918.1 lncRNA upstream 109116 12152765 ~ 12165645 (+) True LOC120556983
TU50577 lncRNA upstream 163973 12109304 ~ 12110788 (+) True G37691
XR_005638970.1 lncRNA upstream 250024 12024330 ~ 12024737 (+) True LOC120557465
TU50441 lncRNA upstream 411791 11861473 ~ 11862970 (+) True G37606
TU50427 lncRNA upstream 417064 11775341 ~ 11857697 (+) True G37595
TU50620 lncRNA downstream 21626 12300250 ~ 12300495 (+) True G37718
TU50642 lncRNA downstream 104832 12383456 ~ 12383735 (+) True G37725
TU50645 lncRNA downstream 106367 12384991 ~ 12385216 (+) True G37728
TU50646 lncRNA downstream 106766 12385390 ~ 12385646 (+) True G37729
TU50675 lncRNA downstream 171428 12450052 ~ 12450548 (+) True G37742
XM_039798915.1 mRNA upstream 147051 12114008 ~ 12127710 (+) True tgm2b
XM_039798726.1 mRNA upstream 162920 12081105 ~ 12111841 (+) True LOC120557971
XM_039797802.1 mRNA upstream 369007 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA upstream 369007 11900776 ~ 11905754 (+) True myl9b
XM_039797570.1 mRNA upstream 880363 11385184 ~ 11394398 (+) True LOC120557336
XM_039798488.1 mRNA downstream 3053 12281677 ~ 12296149 (+) False eif4ba
XM_039798487.1 mRNA downstream 3147 12281771 ~ 12296149 (+) False eif4ba
XM_039798482.1 mRNA downstream 4497 12283121 ~ 12297035 (+) True eif4ba
XM_039798489.1 mRNA downstream 4497 12283121 ~ 12297035 (+) False eif4ba
XM_039798490.1 mRNA downstream 4497 12283121 ~ 12297035 (+) False eif4ba
TU50615 other upstream 19787 12253066 ~ 12254974 (+) True G37714
TU50430 other upstream 469367 11780178 ~ 11805394 (+) True G37597
TU50377 other upstream 880427 11390739 ~ 11394334 (+) False LOC120557336
TU50347 other upstream 922374 11352078 ~ 11352387 (+) True G37525
TU50184 other upstream 1276624 10997230 ~ 10998137 (+) False G37397
TU50647 other downstream 107547 12386171 ~ 12387175 (+) True G37730
TU50865 other downstream 437536 12716160 ~ 12719472 (+) False cdab
XR_005638946.1 other downstream 457243 12735867 ~ 12741048 (+) False b3galt6
TU50929 other downstream 546905 12825529 ~ 12857413 (+) False kif21b
XR_005639082.1 other downstream 913154 13191778 ~ 13191911 (+) True LOC120558254

Expression Profile