RNA id: TU50347


Basic Information

Item Value
RNA id TU50347
length 310
RNA type TUCP
GC content 0.59
exon number 1
gene id G37525
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 11352078 ~ 11352387 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGAAGAAAGCTCTGCATTGCGCCCTGAGCTCTCTCTGCTCCTGCAGCTCTCTCTCAATGGCATCCCGCAGAGCCTCCCTGGTGCAGCTGAGGGTGCGTAAGGCTGCCTTGCCTTCCTGGTGCAACCTTTCCTGGCCCTGCAAGAGAGCGCTCACTCCTTGTCCCTGGGCATGTCCTGGTCCTGCCTCAGGTTCCACCTGCAGCACGGAGCGTTGTGCCCCTGGAGGCAGAAGGGTTAGCAAGGCCTGGGTTGCAGAAGGCTGGATGGCTTTGACTTCTATTAAGGCACCCTGGATCATACGCATGGTCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU50346 lncRNA upstream 2305 11349550 ~ 11349773 (+) True G37524
TU50345 lncRNA upstream 2710 11349136 ~ 11349368 (+) True G37523
TU50344 lncRNA upstream 4407 11347086 ~ 11347671 (+) True G37522
TU50343 lncRNA upstream 7019 11344740 ~ 11345059 (+) True G37521
TU50183 lncRNA upstream 339169 10997230 ~ 11012909 (+) False G37397
TU50348 lncRNA downstream 1889 11354276 ~ 11354743 (+) True G37526
TU50349 lncRNA downstream 3242 11355629 ~ 11356360 (+) True G37527
TU50351 lncRNA downstream 7386 11359773 ~ 11360248 (+) True G37528
TU50383 lncRNA downstream 55589 11407976 ~ 11416351 (+) True G37553
TU50390 lncRNA downstream 69136 11421523 ~ 11421722 (+) True G37560
XM_039796527.1 mRNA upstream 19432 11330556 ~ 11332646 (+) True msx1a
XM_039799019.1 mRNA upstream 86008 11263510 ~ 11266070 (+) True LOC120558115
XM_039799105.1 mRNA upstream 108713 11236707 ~ 11243365 (+) True LOC120558172
XM_039797528.1 mRNA upstream 125496 11219389 ~ 11226582 (+) True aggf1
XM_039797530.1 mRNA upstream 125496 11219410 ~ 11226582 (+) False aggf1
XM_039797567.1 mRNA downstream 9019 11361406 ~ 11375812 (+) True LOC120557333
XM_039797569.1 mRNA downstream 24148 11376535 ~ 11382180 (+) True LOC120557335
XM_039797570.1 mRNA downstream 32797 11385184 ~ 11394398 (+) True LOC120557336
XM_039797802.1 mRNA downstream 541203 11893590 ~ 11905754 (+) False myl9b
XM_039797801.1 mRNA downstream 548389 11900776 ~ 11905754 (+) True myl9b
TU50184 other upstream 353941 10997230 ~ 10998137 (+) False G37397
TU49895 other upstream 1042082 10305187 ~ 10309996 (+) True G37197
unassigned_transcript_198 other upstream 2529347 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 2529770 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 2535681 8816325 ~ 8816397 (+) True trnar-acg_14
TU50377 other downstream 38352 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 427791 11780178 ~ 11805394 (+) True G37597
TU50615 other downstream 900679 12253066 ~ 12254974 (+) True G37714
XR_005639029.1 other downstream 922373 12274760 ~ 12278624 (+) True LOC120557851
TU50647 other downstream 1033784 12386171 ~ 12387175 (+) True G37730