RNA id: unassigned_transcript_197


Basic Information

Item Value
RNA id unassigned_transcript_197
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_12
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8822237 ~ 8822308 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGccgcggcccgggttcgattcccggtCAGGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49464 lncRNA upstream 161960 8624721 ~ 8660277 (+) True G36900
TU49452 lncRNA upstream 209250 8612296 ~ 8612987 (+) True G36890
TU49447 lncRNA upstream 211149 8610361 ~ 8611088 (+) True G36887
TU49374 lncRNA upstream 376646 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 396706 8422173 ~ 8425531 (+) True G36827
XR_005639054.1 lncRNA downstream 63465 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 217155 9039463 ~ 9039769 (+) True G36988
TU49580 lncRNA downstream 407772 9230080 ~ 9230363 (+) True G36991
TU49578 lncRNA downstream 408156 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA downstream 408156 9230464 ~ 9230923 (+) False G36990
XM_039798534.1 mRNA upstream 11843 8798373 ~ 8810394 (+) True tmf1
XM_039799039.1 mRNA upstream 24198 8791773 ~ 8798039 (+) True uba3
XM_039798377.1 mRNA downstream 9956 8832264 ~ 8872166 (+) True tafa4b
XM_039797739.1 mRNA downstream 282028 9104336 ~ 9229981 (+) True suclg2
XM_039797740.1 mRNA downstream 282500 9104808 ~ 9229981 (+) False suclg2
XM_039798187.1 mRNA downstream 537883 9360191 ~ 9398603 (+) True lrig1
XM_039797029.1 mRNA downstream 672976 9495284 ~ 9650337 (+) True magi1b
unassigned_transcript_195 other upstream 5840 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 14549 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 80460 8741706 ~ 8741777 (+) True trnae-cuc_8
unassigned_transcript_190 other upstream 83199 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_189 other upstream 111157 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_198 other downstream 352 8822660 ~ 8822731 (+) True trnae-cuc_13
TU49895 other downstream 1482879 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 2174922 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 2529770 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 2568431 11390739 ~ 11394334 (+) False LOC120557336