RNA id: XM_039797029.1


Basic Information

Item Value
RNA id XM_039797029.1
length 6469
RNA type mRNA
GC content 0.56
exon number 24
gene id magi1b
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 9495284 ~ 9650337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aCAGCAACACATTCCCAGCGCCACAGCAGAGCCCAGAACTGGAAATGTGATTCAGCTAAGTACACGAGAGCGTCGTACCTGGTTAAACGAGCCGAGAACGGCTGTCAAATAGTGCTACCGTCGGTAAGGGTAAAGGTCGAATACGAAGAGAAAAGAGTGCAGTCGCGAAAAGAAACGAAAGAAACACCATTTAAAGTGAGTTTATACAAACAACAGAGGATTTAATAAGTGGAAGCGAGACGTGAGTGGGACCCGTGGCAGATGTAAGATGTCATCGACAAAGGTGGATTAAACTACAGGGGTGTTAAGGGAATGATGAAAACAATATCTACACAGGTGACTTTAGAGCCGACAGGAATGGCTTGATTTCTCATCCCGGGAGAGCGGTGGGACAACGCTGTCAGAGGCACTCATGTTTCTGTGgaagagaaagaaagtttgCTGCACTTCATTCGGATACAAGTCTACTTTCTGAGAGGCATTCCTGCTGTACACTTTTTCTTATCCAAGTGGCAGAGCCCGCCAGTTTTGGTGTCGGCTCATAACTGTTGACCATGTCCAAACCCGTGCTAAAGAAAAACCACTGGACCTTCAGAGTAAACGAGTGCTCCGTCTCGAAAGATGCCAGTGGCGACTTGAATGTGCCACTGCGCGGCGGAGCGGAGAACGGGGAGTTCGCCTACATCGGGCAAGTTAACGAGGATGCCGTGGTTTACAAAAttggaaaaataaatgaagGAGAACTGCTGCTGGAGGTGGAGAATCTCTCCATTTCAGGATTACCCTTGTACGACGTACGTACAGTGATAAAGAACTGCAAAGGTCCCGTCAGGTTGAAAACTGTCAGGCAAGGAAGTAAGCTGAACAAGGACCTGAAGCATTATCTGAGCCAGCGCTTCCAGAAATCCTCGCCTGACCACGAACTGCAGCAGACTATCCGAGACAACCTCTACCGTCACGCCGTGCCTTGTACAACCCGCACCCCGCGTGAAGGAGAAGTTTCTGGCGTGGACTACAACTTCCTCTCAGTGGAGGACTTCCTGAAGTTGGAGAAGAGTGGGACCCTGTTGGAGATAGGAACGTATGACGGTAACTATTATGGGACACCCAAGCCACCGGTGCAGCCCCCCGGTGGGAAAGTGATTAGCAGTAGCGGCGGTGATGCCCCACTGTCAGACGGGCTCAGCGGTAGCCTGCCGGGCTCGCAGAACTCCACTCCCCAACGCACCAAGTCCTACAATGACATGCAAAATGCTGGAATAGGGCCtggagagcagcagcaggaggacgACGAGGACCTTCCTGACATGAACAGTAGCTTTACAGGAGATTCCAGTGAATTAGACGAGATTCATCCCTTCGCCCCCCGCAAGAGTGACCCGCCCTACGTTGGGAGAACCCCCTCACCATCGGCCACCACGGAGAGCACTCAGCAGTCACACTCTAACCTGAGCCATCCTCCCCCGGAGGACCCGCTGGGACCTCTGCCTGACAACTGGGAGATGGCCTACACCGAGAACGGAGAGGTCTACTTCATAGACCACAATACAAAGACCACCTCCTGGATAGACCCTCGGTGCCTGGACAAGCCTCAGAAACCCCTGGAAGAATGTGAAGACGATGAAGGGGTACACACAGAGGAGCTGGACAATGATCTCGaacttcCACAAGGATGGGAGAAAATAGACGATCCAGTGTATGGGGTCTACTATGTTGATCATATCAACAGGAAGACCCAGTATGAGAATCCAGTGTTGGAGGCTAAGAGGCGCAGGCAGCTGGAACAGCAGCAGCCTCAGCAGCCTCAGCAGCCTCAGCAGCCTCAGCCCCAAAGCCAGCAGCCACCTGAAGGTGAGCGCTACATCCGAGAATGGATCGAGGACTCTGTGTTAGCAGGGGCCCCACTGGCCAGCTATGCTGCCAACCAGGAGACCTACAGGGAACCTCAGACCGGACCTCCAGTGCCCAACGCGATGGGGCAAAAACgAGGGAAGCCTTTCTTTACTCGGAACCGATCCGAGCTGAAAGGGACTTTCATTAATACCAAGCTGAAAAAGAGTCGTCGGGGGTTCGGTTTCACTGTTGTTGGAGGCGACGAGCCAGACGAGTTCCTGCAGATCAAGAGCCTGGTCCTGGATGGACCTGCTGCCCTCGATGGCAAAATGGAGACAGGTGATGTGATCGTGAGCGTCAACGACACATGTGTGCTAGGCTACACTCATGCCCAAGTTGTAAAGATCTTCCAATCCATCCCAATTGGCTCTATGGTCAACTTGGAGCTGTGCCGCGGCTACCCACTGCCCTTTGACCCCGATGACCCAAACACTAGCCTGGTAACCTCAGTGGCCATTCTTGAAAACAAGGAGCCCATCATTGTCAACGGCCAGGAGGCCTCCAACAGCTACGACTCGCCGTCCAGCCACAGCAGTCAGAACACCAACAACGGCTCGACCAACGGAGGAGCACCCCTCAACGGCCTACCCCGACCCCACAGCCCCTCGGCAGAGGTGGCCTCCGATACCTCTTCCCAGCACGGTTACCCCAGCGACGTGGTCACCCTGGCCTCATCCATCGCAACACAACCGGAGCTCATCACCGTACACATGGAGAAAGGAGACAAGGGCTTCGGCTTCACCATCGCCGACAGTCCCGGAGGCGGAGGGCAGAGAGTGAAGCAGATCGTGGACTACCCGCGCTGCCGCGGCCTCAAAGAGGGTGACATCATTGTGGAGGTTAACAAGAGAAACGTACAGAGCATGTCCCACAACCAGGTGGTCGACCTGCTCAGCAAGTGTCCCAAAGGCAGCGAGGTCACCATGCTGGTGCAGAGAGGTGTGGCACCTGCAAAAAAGAGCCCAAAACTGGATGGTTTTGAGCAGTCTCCTCCATACAGAGATTACACTAGGATGCAATTGTCGAGAAAGGACAGTCAGAACAGCTCCCAGCATAGCGTTTCCAGCCACCGGAGCACCCACACAGACTCTCCCGTGCACACGTCCCTGGCACCCCCTCTTAGCGAGAGCATCGCTCCCCCGCCCCCCTCTCAGCCCCTGCCAGGCCTGCCGCCCCAGGACTCCCCAGCAGACGGGACCATCCAAAGAAAACCGGACCCCTTTAAGATCTGGGCCCAGTCCAGGAGCATGTATGAAAGTAGGCTTCCAGATTTCCAGGAGCAGGACATTTTTCTGTGGAGGAAAGACACAGGGTTCGGCTTCAGGATCCTAGGAGGCAACGAGCCAGGAGAGCCGatcTACATTGGCCACATAGTGAAGTACGGCGCGGCAGACGAGGACGGACGCCTGCGTTCCGGGGATGAACTGATATGCGTGGACGGCACAGCAGTGGTGGGCAAGTCCCACCAACTTGTGGTGCAACTGATGCAACAGGCTGCCAAGCAGGGCCACGTCAACCTCACTGTGCGACGCAAAACCAACTACACCGTTAAAGCAGAGGGAGACGTGCCCCCATCGCCGGCGTCCTCCCACCACAGCAGCACCCAGGCGCCCAGCTTCACGGAGGAGATGGGGAAGCGCACCCCACAGGGCAGCCAGAACTCCCTAAACACCGTGAGCTCTGGCAGCGGCTCCACCTCCGGCATCGGCAGCGGGGGAGGGGGCGGAGGGGCGGGAGGCAGCGGCAACGCTGTGGTCGCTGCGGCAGTCGCCACCACCTCCTCTCAGCCCCCCAGCGCCATCTCCAACGCCCCCTCCGCCTTGCAGCCCTACGACGTAGAGATCCGCCGTGGCGAGAACGAAGGATTCGGTTTTGTCATTGTCTCTTCGGTGTCGCGGCCTGAAGCTGGCACCACTTTCGCTGGCAATGCATGTGTGGCCATGCCCCACAAAATAGGGCGCATCATCGAAGGGAGCCCAGCAGACCGCTGCGGGAAGCTGAAAGTCGGCGACCGCATCCTAGCTGTGAACGGGTGCTCCATCACCAACAAGTCCCACTCTGACATCGTCAACCTCATCAAGGAGGCCGGGAACACCGTCACACTACGCATCATTCCTGGAGACGAGTCATCTAACGCGTCTTTGTTGACCAATGCGGAGAAGATCGCCACTATAACCACCACTCACACACCTCAGCAACAGGCTGCACCTGAGGCCAGGAACAACACCAAACCAAAACAGGAATCGTTTGAATTCAAAGCACCACAAGGCCCTCCTCCCCAACCCCCTACACAAGTCTCCGCTCAGGATTCTGACTTCTACTCAGTAGACCTGGAGCGAGACAACAAAGGCTTTGGCTTCAGCCTGCGGGGAGGCAGAGAATACAACATGGATCTGTACGTGCTGAGGCTAGCTGAGGACGGAGCGGCCGTCCGCAACGGAAAGATGAGGGTCGGCGATGAAATCTTGGAGATCAACGGCGAGAGCACCAAGGGCATGAAGCACGCGCGAGCCATCGAGCTCATCAAGAGTGGAGGCCGGCGGGCCCATCTGGTGCTTAAGAGGGGTGATGGCTCTGTGCCTGAATATGACGGCAGCCCCAACGACATCAGCCCAGCTGACCCAGCCTCAGGGTTACAAAACGCTGCGGAAGTGAGCGCCCTGCCCCCAACCAACACGCCATCGGAATCAGAAAACCCACCAGAACCCCAACAACCATCCCGGAGCAAGAAGGAGCCGACCCGCCACTCTACCGGCACTGGCAAGCACCACCATTCCAACCACCGCTCCCCCAACAAGAAAACCAGCACGGGGAGACACAGGGGGAAGAAGTCCACGGAGAAGGCTGCGTCCAAGAAGAAGGATGACAAAGGAAGCGACGGCCACCGCCACCATTCCAGCGGCCACCACCGTAGCCGCCACCGTTCACCTAACAAGGGGCACAGCCGGTCGCGCAGTGCAGAAAACACCCTGGATAGCCGCGACGGGGGGCGCCGCCACGGCCGCTCCCCGGACAGACGCCAAGGTCACCACTCCTCCCCACATCGCCGCCACCGCTCTCCTTACCGCTCTCCATACCGCTCGCCTCACCGCCACAGGTCCCCCCACCGCTCTCGGCACCACTCCCCCACCAGACGCCACGCCCATTCCTCAGAGCCCTACCGCCGGTACGCCTCCCCAGAGAGACAGGGCCGCAGCAACGAGAAGCCCAACGGGGGCGAGGCCGTATTGAAGGAGCCACCCAAGACTCCTGAACTCAGCTTCCCTCTCGAGGACAGCGTCCTCCGTGAGCCCCCAGCCCTGGACCGCCTGAACAGAGAGGCCACGCTACCGCCGCTGCGCAGGGAGGAGCGCCTGTACGGGGAGGACAGCCTGCTTTTGAAAGCCTCCTCCATGGATAGAGCCTACAGGGGGGACAGGCTGCTAACGGATGTGGCATCCCGTGGCGGCCAGAGAGACGCCTTCCGAGACAACATCTTGCCCAGAGTGCGCACCCCCGACTCCGATTCAGGCTACAAGAGGTACAGCTCGCTGCTGAGGGGGCGCTCGACCGAGAGGACGGAGAGGGATGGGCGCTACGCCAGCCGAGGCAGTTCCCCCCTGCCGCAGTACCGAGCCCGCAGCCTGGGACGAGACATCTCCCCATTGAGGAGCTTCAGAAGGGACGACTCGGAGGACGAAGAGGACGATGACACTTTTGTAGCGGCCAAGGTGAGAGAGTACTACAGCACGCTCAAGAGCAACACCAGTCGCTCCACCGCCCTGCCGGAGCCCAAGAAGACCTACAAGGACAGCCCCAAAGACCTGAGCATCTGAATGGACGGctgtcagccaatcacagccacTACCCACAAACACCTCAAGTACTCACTCACATATTACCGCTTGGTTCTACACAAATGCACCCAATTGTGAactaacacacgcacgcacgcacacacacacaccagacaacacacatacactcatgcacacacacacctgatgtAACAAAGTTGAGTTACTAACAAGACAGTGATTCCAAAATGACTTTGAAAGctgttttcttccttttttttttaaattgtatgttcttttttttcggtTCTTGTTTTTGGTTAAGCATTCTACATTTACAGTAACTCAGACTTTTCCAGAAAATATAAAACCATAAAAAACAATGATGTGCCTAACAGTTCCATTAACAAGCAACATTTTGCTTTTGATTTGATATGTGACGGGCATTTTGTGCCGCACTGTCAGATGATGAAATGTATGTACTTTTCCACGAGGATCCCATGGAAGTACCACGCACCTGGATCACTGTAACCGGTGCTCACAATGATGCTGTGCATGTCTTTACCGGTTtcaatgtctctctctgtctctctctctctctctctctctctctctctctctctctctctctccccagtgCCACTGTTTTTTAGACATTTGACCAGACTATAGCACAAGCCTGCAtttgtttgtatatttttgACAGTTTGCAGTATGTGTACATTCAGAGGtaatcattttaaatgaatgaagggAACATTAAAAGTTAaactatgatgatgatgattatgttaaaataa

Function

GO: NA

KEGG:

id description
K05631 AIP3, WWP3, BAIAP1; atrophin-1 interacting protein 3 (BAI1-associated protein 1)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49623 lncRNA upstream 84623 9359504 ~ 9410661 (+) False G37023
TU49621 lncRNA upstream 84623 9400334 ~ 9410661 (+) True G37023
TU49578 lncRNA upstream 264330 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA upstream 264361 9230464 ~ 9230923 (+) False G36990
TU49580 lncRNA upstream 264921 9230080 ~ 9230363 (+) True G36991
TU49718 lncRNA downstream 81520 9731857 ~ 9733351 (+) True G37064
TU49739 lncRNA downstream 110710 9761047 ~ 9772228 (+) False prickle2b
TU49772 lncRNA downstream 277698 9928035 ~ 10006856 (+) True G37104
TU49780 lncRNA downstream 307498 9957835 ~ 9962577 (+) True G37112
TU49854 lncRNA downstream 401791 10052128 ~ 10052337 (+) True G37163
XM_039798187.1 mRNA upstream 96681 9360191 ~ 9398603 (+) True lrig1
XM_039797739.1 mRNA upstream 265303 9104336 ~ 9229981 (+) True suclg2
XM_039797740.1 mRNA upstream 265303 9104808 ~ 9229981 (+) False suclg2
XM_039798377.1 mRNA upstream 623118 8832264 ~ 8872166 (+) True tafa4b
XM_039798967.1 mRNA upstream 667905 8810821 ~ 8827379 (+) True eogt
XM_039797358.1 mRNA downstream 52674 9703011 ~ 9754498 (+) True adamts9
XM_039797359.1 mRNA downstream 109896 9760233 ~ 9856656 (+) False prickle2b
XM_039797360.1 mRNA downstream 184723 9835060 ~ 9856656 (+) True prickle2b
XM_039797833.1 mRNA downstream 229691 9880028 ~ 9886125 (+) True psmd6
XM_039798609.1 mRNA downstream 270744 9921081 ~ 9926482 (+) True thoc7
unassigned_transcript_198 other upstream 672553 8822660 ~ 8822731 (+) True trnae-cuc_13
unassigned_transcript_197 other upstream 672976 8822237 ~ 8822308 (+) True trnae-cuc_12
unassigned_transcript_195 other upstream 678887 8816325 ~ 8816397 (+) True trnar-acg_14
unassigned_transcript_192 other upstream 687596 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 753507 8741706 ~ 8741777 (+) True trnae-cuc_8
TU49895 other downstream 654850 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 1346893 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 1701741 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 1740402 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 2129841 11780178 ~ 11805394 (+) True G37597