RNA id: XM_039798967.1


Basic Information

Item Value
RNA id XM_039798967.1
length 2062
RNA type mRNA
GC content 0.49
exon number 16
gene id eogt
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8810821 ~ 8827379 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGGTGTTATGGCGACCACCGGCAACATCATCGCTTCAGTCTGGAGAATAGCAGGCTGTACATTCAGAGTGATGTGAAGAGAGAGGCGGCTATCTCACATGTCTGTGTAATTCTGACTATGTGGCTCTTTGTAGCGCTGGGCATAGTTTTTTCTTTCACTGTGGTCACCACTGAGAAGGCTGAGATCACCACCCACAAACCACCAGCACCGCTGCTCAACTACAGCAGGATCTCCCTGCTGCCAGAGCACGTACCGTACTTCCTCTTCAACAACAAGAGGGTCGCCAAGCAATGCCGCCTGGACCCGCTCTGCCCTTTTAAAGGTGCACTGCAGGATCTATCTGCCTGTTGGGGCTACGAGAAGAACTGTGATCCAAGGAAGCGCTTTAGCTATCCAGTCTGTACCAAAGCTGACTCTGGATGGGCCCGTTCTCTGGAGGCAGCACAGGAGCTTTTCTGGAAGCAGGCTGATTTTGGCTACGTCAAGGAGCGCCTCTCTGAGCTCAAAACACTCTGCAAGGCCAGCAAGCCAGGGGACTCGTCATTAAGATGTAGTAGCCAAACTCGCTTCTGTAAGGCAACTAACCTTTACCTGGACTTGCGTAAGCCACGCAGAAGTCATGAGAGGTACAAAGAGGACTTCATTCAGAAGGGTGAGATTGGCGGTCATTGCAGACTGAACAAGCGATCTCTTGCTGCCGAGGGAGAGCACAAGAGCCCCTTGCAATCTTGGTATGCTGAGCTGCAAACATACACAGAGCTGGACTTTCATCCTATAGAGGATGAACACTGTGATGTCGTCATTGAAAAACCCACTGTATTTATGAAGCTGGATGCTGGGGTGAATATGTACCACCATTTCTGTGACTTTGTCAACCTCTACATCTCCCAGCACATTAACAACTCCTTCAGCTCAGATATCAACATCATCATGTGGGACACGAGTTTTTATGGTTATGGAGATCTGTTCGGTGAAACATGGAGGGCCTTCTCAGAGTATGACATCATCCACCTGAAGACCTATGACTCGAAAAGAGTGTGTTTCAAAGATGCcttcttctccctcctcccGAGAATGAGATACGGCCTCTTTTACAACACGCcccttATCTCAGACTGCTACAGTGAAGGGATGTTTCGGGCATTCTCCCAGCATGTCCTGCATCGACTGAACATCCTGCAAGATGGGCCAAAGGAGGGGCGTGTTCGTGTCACCCTGCTGGCACGCAGCACAGAATACAGAAGGATATTAAACCAAGTGGAGCTAGTAAATGCTCTCAAGACTGTGCCTTTACTGGAGGTCAATGTGGTGGACTACAAATACAAGGATGTTCCCTTCTTGGTGCAGTTGAGGATCACCCACAACTCAGATATCTTTATAGGGATGCACGGGGCGGGTCTCACacacctcctcttcctccctgacTGGGCTGTCATCTTTGAGCTATATAATTGTCAGGATGAGAGCTGCTATCGAGATTTGGCTCGGCTGCGGGGCATTCGATACGTGACTTGGCAGAAAATGGACAAAGTGCTCCCACAGGACAAGGGTCACCATCCAACCCTCGGGGACCATCCAAAGTTTACCAACTACTCCTTTGATGTGGGGGAGTTCATGCGCCTTGTGCTGGAGGCAGCTGATTACGTTACACACCATCCCAAATGGCAGCATCATACCGTTCATGATGAACTCTAGAGTCTCTGTGAGTGTGGGACAGACATCTGGCTGCTGAAGAACTTTTAACATGAACCTGCTGTTTGTGATCTAAAGACATCTTCACAACGGCAGCGTCAtttttaaagaatatttaaaCGTTACCTCAGTATTTGTAACCTGCTGCTTTGATAGGTCTGGATGTGTCAAAATGGTCTGCAATTCTGGTTTGTATAGCCTCGACCAGCTCTATTAGTGTCAAATCAGTTAAAGGAGGGCGCCCTGGTAGcttacctggtagagcgtgcaccccatgtaccaaggctcagtccttacctgAGCGGCCCAAgattcaaatctgacctgtggccctttgctgcatgtcttccacctctctctctctctctct

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K18134 EOGT; EGF domain-specific O-GlcNAc transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49464 lncRNA upstream 150544 8624721 ~ 8660277 (+) True G36900
TU49452 lncRNA upstream 197834 8612296 ~ 8612987 (+) True G36890
TU49447 lncRNA upstream 199733 8610361 ~ 8611088 (+) True G36887
TU49374 lncRNA upstream 365230 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 385290 8422173 ~ 8425531 (+) True G36827
XR_005639054.1 lncRNA downstream 58394 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 212084 9039463 ~ 9039769 (+) True G36988
TU49580 lncRNA downstream 402701 9230080 ~ 9230363 (+) True G36991
TU49578 lncRNA downstream 403085 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA downstream 403085 9230464 ~ 9230923 (+) False G36990
XM_039798534.1 mRNA upstream 427 8798373 ~ 8810394 (+) True tmf1
XM_039799038.1 mRNA upstream 12782 8791740 ~ 8798039 (+) False uba3
XM_039798377.1 mRNA downstream 4885 8832264 ~ 8872166 (+) True tafa4b
XM_039797739.1 mRNA downstream 276957 9104336 ~ 9229981 (+) True suclg2
XM_039797740.1 mRNA downstream 277429 9104808 ~ 9229981 (+) False suclg2
XM_039798187.1 mRNA downstream 532812 9360191 ~ 9398603 (+) True lrig1
XM_039797029.1 mRNA downstream 667905 9495284 ~ 9650337 (+) True magi1b
unassigned_transcript_192 other upstream 3133 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_191 other upstream 69044 8741706 ~ 8741777 (+) True trnae-cuc_8
unassigned_transcript_190 other upstream 71783 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_189 other upstream 99741 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_186 other upstream 168720 8642030 ~ 8642101 (+) True trnae-cuc_5
TU49895 other downstream 1477808 10305187 ~ 10309996 (+) True G37197
TU50184 other downstream 2169851 10997230 ~ 10998137 (+) False G37397
TU50347 other downstream 2524699 11352078 ~ 11352387 (+) True G37525
TU50377 other downstream 2563360 11390739 ~ 11394334 (+) False LOC120557336
TU50430 other downstream 2952799 11780178 ~ 11805394 (+) True G37597

Expression Profile