RNA id: TU49464


Basic Information

Item Value
RNA id TU49464
length 1986
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G36900
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8624721 ~ 8660277 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGTAGAACTTAATCAGCTATCAAGATAGTGTATCACATCCTTTATTGGAAAGCTTTTAGAATGATAATATACCTCCATTCCCTTTGCAAAATACTAAGAGCCTTCTTTGTCCTGGCTGAGCTGAGTTACCATAACTGCTGGAAGATGCTGTACTTTCTTCCTTCAAAAtgcacaatgttatttattCCTTTCCAACATGCCAAAAACATTATAATGAAATCATTACCATCATCAGGTTTGTCACAGTATGTCACTCTCCATTTACTTTAAAGAGGACCAGCAGTCACACCAATGCACACTTGAACACATGCATCCGGCACATGCCAGTACATGCAGgtacactgtatatatacactggcacgcacgcacgcacacacacacactcgcacacacttTATCCCGACTGTCTGGTCCACAGTCACTTAACAGTTTAGAGGTCTATGCATGTCACATTCTTAACATCAGAGCCCGCTGAATGCTGCTTCATGCCTGAACATCTGGAGCTCTAGATAAAacagtcaaaaaaaataaatcaaaacaacaaaaaataaacaaacaaatacacctgCTGGTAATTTCACTCAGGCAcattatagtaacaaaaaacaaacacaaaaggaTAGGTGAAAGCTGTGATAAATGGGAAATTGTGCGAGAAATGGTTCCCATATCTACTCTCCCTGTTGGAGTTAAAGAATAAAGAACACTTTTGGAACAAGCATAGTCACCTTTTTGGCccgaaaaaacaacaacacttaaAACTATATAAACAAACCAGACAACTTAAAATGAGAGGAAAGACATTCAAAGACAAAGAACACAGTCAGAGCACACCAGTTAAACagccacaaacaaacagagactGTAGTATTGTGTctacagacagacaacacatgCTAAGCTGATATCAGAGGGATGTTGCAGTGTGGTACTTGCAGTCATACAGGTTTAACAGTTGAAAGGACTAAAAATGAATGCTTGCTGCAAGCATTAATGTGCTCCCTTTGACAAGAGTAACATTACATACAAGATATGCAGTAGTTAAGTGTGCAACTGGGCTGGAAAGAGTTAAGAGTTGCATCAATACAGTGATTCAAACACTGATGTAATGCTTCTCTAAATAAGAGCTGTGTCCAACTGtacacaccctcacacacacgcatCACAGGCCATGGTGGTACATCTATATGAGAAAACAAAGGACAAAGTTTACATAGAATCTACATCAGGAATACAATCACTTTAGCAGACATGTTAGACTATAAAATGTAACAAACTCACTTTTGTTTGCTTCGGTTGTGTCCAACCAACCTGATGCTGGACCACTACACCCATATTACACACTGCCACTGAAGTCCAAACTGTATCAAACCAGTGTTAACGTTATCCTAGTGTAAGTACTTAAGGATTTAATGATATAGATGTTCATGATGGGattctgtttttccaaaaaagtctttaaacacaacactgttcCCAGGAGTGCCATGTCCAAATGCAACAGTGATCCAAAGTACCTGCATACATATTTCCCAGTGGGTTAAATTATATCCCAAGTTAGACAGTTTATGCAGAAGTCCTCCAGGAGTCAACAGTGAAGGGAATTCAATTACAGTATAGTCTTCTGTCATCAAAGAGCATCCTATGTTTGAAAAGATTGTGTCAACTCCTAAGGCTGACAGAGTCTGTGGAggtacgggggggggggggatgtaaCTGTGATCCAAAGTACCTGCATACATATTTCCCAGTGGGTTAAATTATATCCCAAGTTAGACAGTTTATGCAGAAGTCCTCCAGGAGTCAACAGTGAAGGGAATTCAATTACAGTATAGTCTTCTGTCATCAAAGAGCATCCTATGTTTGAAAAGATTGTGTCAACTCCTAAGGCTGACAGAGTCTGTGGAGGTACGGGGGATGTAACTGTGATCCTAACAGTTTAGGTATGCACACAGCTCAAACAGGGATCCCCATGCGaagcttctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49452 lncRNA upstream 11734 8612296 ~ 8612987 (+) True G36890
TU49447 lncRNA upstream 13633 8610361 ~ 8611088 (+) True G36887
TU49374 lncRNA upstream 179130 8445392 ~ 8445591 (+) True G36836
TU49365 lncRNA upstream 199190 8422173 ~ 8425531 (+) True G36827
TU49358 lncRNA upstream 205140 8418304 ~ 8419581 (+) True G36826
XR_005639054.1 lncRNA downstream 225496 8885773 ~ 8940038 (+) True LOC120558080
TU49576 lncRNA downstream 379186 9039463 ~ 9039769 (+) True G36988
TU49580 lncRNA downstream 569803 9230080 ~ 9230363 (+) True G36991
TU49578 lncRNA downstream 570187 9230464 ~ 9230954 (+) True G36990
TU49579 lncRNA downstream 570187 9230464 ~ 9230923 (+) False G36990
XM_039796425.1 mRNA upstream 128062 8483190 ~ 8496659 (+) True gata2a
XM_039799038.1 mRNA downstream 131463 8791740 ~ 8798039 (+) False uba3
XM_039799039.1 mRNA downstream 131496 8791773 ~ 8798039 (+) True uba3
XM_039799036.1 mRNA downstream 131510 8791787 ~ 8798039 (+) False uba3
XM_039799035.1 mRNA downstream 131603 8791880 ~ 8798039 (+) False uba3
XM_039799037.1 mRNA downstream 131811 8792088 ~ 8798039 (+) False uba3
unassigned_transcript_183 other upstream 7652 8616998 ~ 8617069 (+) True trnae-cuc_4
TU49260 other upstream 396001 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1365771 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1986334 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2571952 6035100 ~ 6052769 (+) False rybpb
unassigned_transcript_189 other downstream 50732 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 78690 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 81429 8741706 ~ 8741777 (+) True trnae-cuc_8
unassigned_transcript_192 other downstream 147339 8807616 ~ 8807688 (+) True trnar-acg_13
unassigned_transcript_195 other downstream 156048 8816325 ~ 8816397 (+) True trnar-acg_14

Expression Profile