RNA id: TU49358


Basic Information

Item Value
RNA id TU49358
length 902
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G36826
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8418304 ~ 8419581 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGTAGATATATTTGGAGCAGATGTCACGCACCATCCTGGGGGTCACGGCATCGATACGAGCATCCCACTCTGCCAGAGGAATACGCCGCCCGTAGTTCAGGATGTGTCTTCCGATGTCGTCACAAAGTGGCGTTGTTCCATTGAGCTGTCCAACCAGGCTGGCCTTCAGAGCGTTCTTGCCTCTGGCTACTTCACTCTCTGTCACTGTGGTACACAGGTTCATCCAGGCATTCTGGGACCAGTGCATCATATCTTCGATTTGGTGCTTATCACATACAAAGTAAATGCCCAGCAGGCCGGTGTCGCTATAGGAGGAGTGGAAGGCCTGGAAGCTGTGACACAGGTTCTCCTCCACTGCCAGGCGAGCCAGGCGGCTGCTCAGATGCTGCAGGTGAGAGAAAGGAATGACCGTTGATATTCGACTGTTCACAATCAAAACTAGATTATAGTCACACCAGCATCAGGAAATAGGTTGAAATATTCATGGTGTCAGGTTGACCCGCTCTAAGTAGGCTTAGTAGTTCTAAATAGGCTAGTTATAGCAGTACAGTGTTAAAGTAGTACAACAGAAAAATGATATGAATATGAAAAACTTTTATAGTTCTGTATATTCCCAACTTCGGGATTTAAAGCTGATATCCATAACATTCCACACGTTACCCTCCAACTACAGCAAAGATGGAACAGGTGTAGCGCAAGTCCAACATCTTCCGCCCCACAAACAAGCTTattatggcgcttttccattacatggtacctgctcgactcgcctcaagttttccattacgaaaacaAAAAGTACCTGCTACCTGCtaacgtgtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49352 lncRNA upstream 10611 8405244 ~ 8407693 (+) True G36820
TU49271 lncRNA upstream 173858 8239463 ~ 8244446 (+) False G36754
TU49270 lncRNA upstream 176412 8239463 ~ 8241892 (+) True G36754
TU49261 lncRNA upstream 193532 8224258 ~ 8224772 (+) True G36745
TU49243 lncRNA upstream 270075 8147927 ~ 8148229 (+) True G36728
TU49365 lncRNA downstream 2592 8422173 ~ 8425531 (+) True G36827
TU49374 lncRNA downstream 25811 8445392 ~ 8445591 (+) True G36836
TU49447 lncRNA downstream 190780 8610361 ~ 8611088 (+) True G36887
TU49452 lncRNA downstream 192715 8612296 ~ 8612987 (+) True G36890
TU49464 lncRNA downstream 205140 8624721 ~ 8660277 (+) True G36900
XM_039798872.1 mRNA upstream 83450 8329315 ~ 8334854 (+) True si:dkey-202e22.2
XM_039798873.1 mRNA upstream 83450 8329315 ~ 8334854 (+) False si:dkey-202e22.2
XM_039798875.1 mRNA upstream 84299 8329315 ~ 8334005 (+) False si:dkey-202e22.2
XM_039798532.1 mRNA upstream 181655 8233082 ~ 8236649 (+) True arpc4l
XM_039797256.1 mRNA upstream 205466 8202280 ~ 8212838 (+) False LOC120557172
XM_039797936.1 mRNA downstream 31120 8450701 ~ 8453316 (+) True hmces
XM_039796423.1 mRNA downstream 47019 8466600 ~ 8474022 (+) True rpn1
XM_039796425.1 mRNA downstream 63609 8483190 ~ 8496659 (+) True gata2a
XM_039796424.1 mRNA downstream 67793 8487374 ~ 8496659 (+) False gata2a
XM_039796426.1 mRNA downstream 67794 8487375 ~ 8496659 (+) False gata2a
TU49260 other upstream 189584 8227762 ~ 8228720 (+) True G36744
TU48863 other upstream 1159354 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1779917 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2365535 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 2493904 5920924 ~ 5924400 (+) True G36156
unassigned_transcript_183 other downstream 197417 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 222449 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 291428 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 319386 8738967 ~ 8739038 (+) True trnae-cuc_7
unassigned_transcript_191 other downstream 322125 8741706 ~ 8741777 (+) True trnae-cuc_8

Expression Profile