LOC120557172 (rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941)


Basic Information

Item Value
gene id LOC120557172
gene name rbm38,LOC104939027,LOC101475440,LOC103365886,LOC107102025,LOC107384941
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8202280 ~ 8212838 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039797256.1
ATTCTCAGCAGCGAAGAAGCAACCAGTTTGGATGCTACCGGAACAGCCCACGCAGCGTGAATCATAGTTGTCATCAGGTTGCTACAACTTTGAGCGAAGGTCATAACAGAAAAGGAAAACTGCAGCATAATATATTGAAATAATCATTTTAGTTTCACTAATGCTGGGACGTTGTTAAGCGCTTAGTATATTTTCAGCGTGCCTCCGGTCTTCTCTCCTGCTGACCAATGCTTCTGCATCAGTTCATGAACGGAGCTCTGGAAGTCATGCATCCCACACCGCTTCAGAAAGACACTACTTTTACCAAAATCTTTGTCGGGGGGCTGCCATACCACACGAACGATGCTTCACTGAGAAAATACTTCGAGGCCTTTGGGGACATTGACGAGGCTGTGGTGATAACGGACAGACAGACCGGTAAATCCAGAGGATACGGCTTTGTGACGATGACGGACcgaggagcagcagagagagcctGCAAGGACCCCAACCCCATAATCGATGGCAGGAAGGCCAACGTGAACCTGGCCTACCTGGGTGCCAAACCCCGCAGCATACAGACAGGCATATCCATCGGAGTGCAGCCCATTCACCCAGCACTCATCCAGAGGCAGTATGGGTTGGCCCAGCAATATGTCTACCCCCAAGCCTATGTGCAGCCCAGCCTGGTGCTGCCCACTCAGGTTTCCAGCTCCGTGAGCACCAGCCCCTACATGGACTACAGCGCAGCCTACACCCAGTACGCTCAGGCAGCCTTTGAGCAGCAGTACCCGTATGCCGCCTCCCCAGCTAGCTTCCTGGGCTACAGCTACGCCACCAGCCCCACAGCCACTGCCGGTCCGGCCGCCGCCGCCACAGTTCCAGCCACCGTCCACCCCACCCTCCCCTCCGCCACTGGCCAGGCCCAGGCCTTCCTGCACTATGCCCCGCAGCAGCACATCCAGCCGGACCGTATGCAGTGAGTCTGTGAAGGAAGGGGAGAAGAAGGAGTGGTacaggtggtggaggaggaggagggagtagGGGATGCGGACCTTTGGACAGAGGATGGCAAAACGCCCTACAGGGTGACCCCAGCTATCATCAGCCGAGGCTTTCAGGAAAAAGGGTGGGACTATTGCACTATACGATCAGGAGGAGTCGTTTGCTCATTGGTTAAGGGGTTGGGAGGGGTTGGAGGactgtcgatgttcaaattggGAGGCTAAACAGCAAAGTATGTGATCGCTTCCAAGGGCTTCCAGAAGCTGacacttcattttttttattattattattttatcgtCATTTATTGTTGTATTAATGTCATTGTCAATGTTTGTATGCCATTATTATCAATGTTATCATGTTTTTGGCTCAATCAGTGGAAGTTATGTGTCCATGGTACATAGTAATGATGGAGAGCTGTCTGGGACATGTCACACCTCTTTCCTCCCGACTCCAGAGCATCTGGGGCGGATATGAAGAGAACTGCTGCTTTAAGACACTCGGGGACAGTCAGAAATGTGGGGTGCAGGGTGAAGACATTTTGGGGATTTGGAGAGGCACGTAGCCTGCCTTTCTGCCTATCTGTGGTCCCATCCTAGTGCCATCCACAGTAAGGTAGAGCACTGACTGCCCCATGAACAAACCTCCAGCCGTTAGCTCCCCAACACAGGAGGACGATGAGAGATTTCACCTCAAGGACAAAATGGAACGAAGGTTTTCAGTATACAAGACATGTTTTGAGACTGTGATGTTAGgactacactttttttttttaattcttattAATTAAAGAGGCCTTAATGAAAGAGAAACTCCTTTTTGAATCTCCTGATTTTTCAAGTGCTCCCCCCACCACAGAACCAAGTGCAGAGAGCCCTCTGTAACTGGCCTTTCAGCAGTCAGTCACTTTGCTCTGGCTTACTTGGGTCTTGATAATTTCAAATGGATGTAGATAATCACATGCAGTATGTGGGCCATGGGGACCAGGAGCGCTGTGCATCGTTGTTAAAAGGTAGCTGACACTGAGCTTAAACACCagtgtattttctttctttttttttcctgactgAGATTGTCACAAATTGTTGCTCTCAAAAGGACATTCATGTAcagcaatttaaaatgttttcagtcaTCAAGTACATTTACAATATTTATATGTAGGTATTTATATTAGGAACTAAGTTAAGatagcttctttttttgttttgttactatGACTATGGTTGCAGCACTGATTTCATTTAACCTGCAGAGGCACACCTGCAAATCCACAGGTGTCGtattcatttagtttttttgttctttcacCATGTCAGTGGATTTGCCCGGGTGCATGGCAACTACAGTAGATGCTCCTTTGTAGATCCTTGACCGGTTTGCATCTGAAATTCTCTAGAATTTTTCAATAAAGATGTCTTTTACAGTCCCTTCAAGAAgccataacaaaaaaaaaaatggaaataaagaCTTTGTACTTAAA
>XM_039797257.1
AAGGCTCTTCACAGTGTAAACACAGCCTTGTTCCTTCCTGTGTGTTCACAACACAGGCCCTGGAGTGGGCTTAGTTCCGGATCCTTCCACTATGAAGAGGCATACTGCTTTTAAAAACGTCCTCTTAAACAATGCAAGCCGTGGCCTACATTTACTGCTCGGTCCACACACCGAGGTGACTGAACCCTCTGAGTTGGCAGAATGTGGCAAACAAAACAGAAGGACTCGTCTAAAgccaggagggagagaggaggggtggACTAATACCAATCTCCTTAATATTTTATCCCTAATTGGATAAGCTCCTTGTTGCTCTTCCCAGAACCATATTTCAGCAGGTCTGCCTGTGGCTGAGTGGCAGTCAAGTGTCTGGCTACTGCTGGTGTGGGCAGTTTTCAAAGCTTATCATTGTGCTTTGTTTGTAGTTTCCCCTTTTTCGTCAGAATCATAACAGTGGAAAGTCTGTGACGATGACGGACcgaggagcagcagagagagcctGCAAGGACCCCAACCCCATAATCGATGGCAGGAAGGCCAACGTGAACCTGGCCTACCTGGGTGCCAAACCCCGCAGCATACAGACAGGCATATCCATCGGAGTGCAGCCCATTCACCCAGCACTCATCCAGAGGCAGTATGGGTTGGCCCAGCAATATGTCTACCCCCAAGCCTATGTGCAGCCCAGCCTGGTGCTGCCCACTCAGGTTTCCAGCTCCGTGAGCACCAGCCCCTACATGGACTACAGCGCAGCCTACACCCAGTACGCTCAGGCAGCCTTTGAGCAGCAGTACCCGTATGCCGCCTCCCCAGCTAGCTTCCTGGGCTACAGCTACGCCACCAGCCCCACAGCCACTGCCGGTCCGGCCGCCGCCGCCACAGTTCCAGCCACCGTCCACCCCACCCTCCCCTCCGCCACTGGCCAGGCCCAGGCCTTCCTGCACTATGCCCCGCAGCAGCACATCCAGCCGGACCGTATGCAGTGAGTCTGTGAAGGAAGGGGAGAAGAAGGAGTGGTacaggtggtggaggaggaggagggagtagGGGATGCGGACCTTTGGACAGAGGATGGCAAAACGCCCTACAGGGTGACCCCAGCTATCATCAGCCGAGGCTTTCAGGAAAAAGGGTGGGACTATTGCACTATACGATCAGGAGGAGTCGTTTGCTCATTGGTTAAGGGGTTGGGAGGGGTTGGAGGactgtcgatgttcaaattggGAGGCTAAACAGCAAAGTATGTGATCGCTTCCAAGGGCTTCCAGAAGCTGacacttcattttttttattattattattttatcgtCATTTATTGTTGTATTAATGTCATTGTCAATGTTTGTATGCCATTATTATCAATGTTATCATGTTTTTGGCTCAATCAGTGGAAGTTATGTGTCCATGGTACATAGTAATGATGGAGAGCTGTCTGGGACATGTCACACCTCTTTCCTCCCGACTCCAGAGCATCTGGGGCGGATATGAAGAGAACTGCTGCTTTAAGACACTCGGGGACAGTCAGAAATGTGGGGTGCAGGGTGAAGACATTTTGGGGATTTGGAGAGGCACGTAGCCTGCCTTTCTGCCTATCTGTGGTCCCATCCTAGTGCCATCCACAGTAAGGTAGAGCACTGACTGCCCCATGAACAAACCTCCAGCCGTTAGCTCCCCAACACAGGAGGACGATGAGAGATTTCACCTCAAGGACAAAATGGAACGAAGGTTTTCAGTATACAAGACATGTTTTGAGACTGTGATGTTAGgactacactttttttttttaattcttattAATTAAAGAGGCCTTAATGAAAGAGAAACTCCTTTTTGAATCTCCTGATTTTTCAAGTGCTCCCCCCACCACAGAACCAAGTGCAGAGAGCCCTCTGTAACTGGCCTTTCAGCAGTCAGTCACTTTGCTCTGGCTTACTTGGGTCTTGATAATTTCAAATGGATGTAGATAATCACATGCAGTATGTGGGCCATGGGGACCAGGAGCGCTGTGCATCGTTGTTAAAAGGTAGCTGACACTGAGCTTAAACACCagtgtattttctttctttttttttcctgactgAGATTGTCACAAATTGTTGCTCTCAAAAGGACATTCATGTAcagcaatttaaaatgttttcagtcaTCAAGTACATTTACAATATTTATATGTAGGTATTTATATTAGGAACTAAGTTAAGatagcttctttttttgttttgttactatGACTATGGTTGCAGCACTGATTTCATTTAACCTGCAGAGGCACACCTGCAAATCCACAGGTGTCGtattcatttagtttttttgttctttcacCATGTCAGTGGATTTGCCCGGGTGCATGGCAACTACAGTAGATGCTCCTTTGTAGATCCTTGACCGGTTTGCATCTGAAATTCTCTAGAATTTTTCAATAAAGATGTCTTTTACAGTCCCTTCAAGAAgccataacaaaaaaaaaaatggaaataaagaCTTTGTACTTAAA

Function

symbol description
rbm38 Predicted to enable RNA binding activity. Predicted to be active in cytosol and nucleus. Is expressed in heart. Orthologous to human RBM38 (RNA binding motif protein 38).

NR:

description
RNA-binding protein 38

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039797256.1 False 2470 mRNA 0.47 4 8202280 8212838
XM_039797257.1 True 2494 mRNA 0.48 4 8204341 8212838

Neighbor

gene id symbol gene type direction distance location
rae1 rae1 coding upstream 1593 8191703 ~ 8200687 (+)
LOC120556871 NA coding upstream 25232 8170682 ~ 8177048 (+)
LOC120557574 LOC104939084,LOC103365882 coding upstream 59333 8140234 ~ 8142947 (+)
cdh4 LOC102194679,LOC102298797,LOC100702438 coding upstream 86249 7885752 ~ 8116031 (+)
LOC120557341 LOC106565946 coding upstream 432538 7762888 ~ 7769742 (+)
arpc4l arpc4,LOC103358720 coding downstream 20244 8233082 ~ 8236649 (+)
si:dkey-202e22.2 LOC104952071,LOC103375511 coding downstream 116477 8329315 ~ 8334854 (+)
hmces hmces coding downstream 237863 8450701 ~ 8453316 (+)
rpn1 rpn1,LOC107091506 coding downstream 253762 8466600 ~ 8474022 (+)
gata2a LOC103359878,LOC102204047,LOC100705840,LOC101487525,LOC102779036 coding downstream 270352 8483190 ~ 8496659 (+)
G36728 NA non-coding upstream 54051 8147927 ~ 8148229 (+)
G36727 NA non-coding upstream 56017 8144541 ~ 8146263 (+)
G36649 LOC104950789,LOC103358841 non-coding upstream 449643 7699642 ~ 7752637 (+)
G36638 NA non-coding upstream 538406 7662944 ~ 7663874 (+)
G36616 LOC103386327,LOC105417874 non-coding upstream 655245 7543986 ~ 7547035 (+)
G36745 NA non-coding downstream 11420 8224258 ~ 8224772 (+)
G36754 NA non-coding downstream 26625 8239463 ~ 8244446 (+)
G36820 NA non-coding downstream 192406 8405244 ~ 8407693 (+)
G36826 LOC100705312 non-coding downstream 205466 8418304 ~ 8419581 (+)
G36827 LOC100705312,LOC102203484,LOC101465335,LOC104933013 non-coding downstream 209335 8422173 ~ 8425531 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other upstream 895937 7288907 ~ 7306343 (+)
G36458 LOC100304472,LOC107385856 other upstream 929912 7209996 ~ 7272368 (+)
si:dkey-245f22.3 NA other upstream 1015066 7183199 ~ 7187214 (+)
setmar LOC100698471 other upstream 1563757 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 1896137 6139463 ~ 6306143 (+)
G36744 NA other downstream 14924 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 1547395 9760233 ~ 9856656 (+)
G37197 NA other downstream 2092349 10305187 ~ 10309996 (+)
glrx glrx other downstream 2175070 10387908 ~ 10396187 (+)
G37397 LOC102299939,LOC103353648,LOC103366902,LOC102208776,LOC100700987,LOC104921056 other downstream 2784392 10997230 ~ 11012909 (+)

Expression


Co-expression Network