RNA id: XM_039797256.1


Basic Information

Item Value
RNA id XM_039797256.1
length 2470
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC120557172
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 8202280 ~ 8212838 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTCTCAGCAGCGAAGAAGCAACCAGTTTGGATGCTACCGGAACAGCCCACGCAGCGTGAATCATAGTTGTCATCAGGTTGCTACAACTTTGAGCGAAGGTCATAACAGAAAAGGAAAACTGCAGCATAATATATTGAAATAATCATTTTAGTTTCACTAATGCTGGGACGTTGTTAAGCGCTTAGTATATTTTCAGCGTGCCTCCGGTCTTCTCTCCTGCTGACCAATGCTTCTGCATCAGTTCATGAACGGAGCTCTGGAAGTCATGCATCCCACACCGCTTCAGAAAGACACTACTTTTACCAAAATCTTTGTCGGGGGGCTGCCATACCACACGAACGATGCTTCACTGAGAAAATACTTCGAGGCCTTTGGGGACATTGACGAGGCTGTGGTGATAACGGACAGACAGACCGGTAAATCCAGAGGATACGGCTTTGTGACGATGACGGACcgaggagcagcagagagagcctGCAAGGACCCCAACCCCATAATCGATGGCAGGAAGGCCAACGTGAACCTGGCCTACCTGGGTGCCAAACCCCGCAGCATACAGACAGGCATATCCATCGGAGTGCAGCCCATTCACCCAGCACTCATCCAGAGGCAGTATGGGTTGGCCCAGCAATATGTCTACCCCCAAGCCTATGTGCAGCCCAGCCTGGTGCTGCCCACTCAGGTTTCCAGCTCCGTGAGCACCAGCCCCTACATGGACTACAGCGCAGCCTACACCCAGTACGCTCAGGCAGCCTTTGAGCAGCAGTACCCGTATGCCGCCTCCCCAGCTAGCTTCCTGGGCTACAGCTACGCCACCAGCCCCACAGCCACTGCCGGTCCGGCCGCCGCCGCCACAGTTCCAGCCACCGTCCACCCCACCCTCCCCTCCGCCACTGGCCAGGCCCAGGCCTTCCTGCACTATGCCCCGCAGCAGCACATCCAGCCGGACCGTATGCAGTGAGTCTGTGAAGGAAGGGGAGAAGAAGGAGTGGTacaggtggtggaggaggaggagggagtagGGGATGCGGACCTTTGGACAGAGGATGGCAAAACGCCCTACAGGGTGACCCCAGCTATCATCAGCCGAGGCTTTCAGGAAAAAGGGTGGGACTATTGCACTATACGATCAGGAGGAGTCGTTTGCTCATTGGTTAAGGGGTTGGGAGGGGTTGGAGGactgtcgatgttcaaattggGAGGCTAAACAGCAAAGTATGTGATCGCTTCCAAGGGCTTCCAGAAGCTGacacttcattttttttattattattattttatcgtCATTTATTGTTGTATTAATGTCATTGTCAATGTTTGTATGCCATTATTATCAATGTTATCATGTTTTTGGCTCAATCAGTGGAAGTTATGTGTCCATGGTACATAGTAATGATGGAGAGCTGTCTGGGACATGTCACACCTCTTTCCTCCCGACTCCAGAGCATCTGGGGCGGATATGAAGAGAACTGCTGCTTTAAGACACTCGGGGACAGTCAGAAATGTGGGGTGCAGGGTGAAGACATTTTGGGGATTTGGAGAGGCACGTAGCCTGCCTTTCTGCCTATCTGTGGTCCCATCCTAGTGCCATCCACAGTAAGGTAGAGCACTGACTGCCCCATGAACAAACCTCCAGCCGTTAGCTCCCCAACACAGGAGGACGATGAGAGATTTCACCTCAAGGACAAAATGGAACGAAGGTTTTCAGTATACAAGACATGTTTTGAGACTGTGATGTTAGgactacactttttttttttaattcttattAATTAAAGAGGCCTTAATGAAAGAGAAACTCCTTTTTGAATCTCCTGATTTTTCAAGTGCTCCCCCCACCACAGAACCAAGTGCAGAGAGCCCTCTGTAACTGGCCTTTCAGCAGTCAGTCACTTTGCTCTGGCTTACTTGGGTCTTGATAATTTCAAATGGATGTAGATAATCACATGCAGTATGTGGGCCATGGGGACCAGGAGCGCTGTGCATCGTTGTTAAAAGGTAGCTGACACTGAGCTTAAACACCagtgtattttctttctttttttttcctgactgAGATTGTCACAAATTGTTGCTCTCAAAAGGACATTCATGTAcagcaatttaaaatgttttcagtcaTCAAGTACATTTACAATATTTATATGTAGGTATTTATATTAGGAACTAAGTTAAGatagcttctttttttgttttgttactatGACTATGGTTGCAGCACTGATTTCATTTAACCTGCAGAGGCACACCTGCAAATCCACAGGTGTCGtattcatttagtttttttgttctttcacCATGTCAGTGGATTTGCCCGGGTGCATGGCAACTACAGTAGATGCTCCTTTGTAGATCCTTGACCGGTTTGCATCTGAAATTCTCTAGAATTTTTCAATAAAGATGTCTTTTACAGTCCCTTCAAGAAgccataacaaaaaaaaaaatggaaataaagaCTTTGTACTTAAA

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49243 lncRNA upstream 54051 8147927 ~ 8148229 (+) True G36728
TU49242 lncRNA upstream 56017 8144541 ~ 8146263 (+) True G36727
TU49149 lncRNA upstream 449643 7699642 ~ 7752637 (+) True G36649
TU49116 lncRNA upstream 538406 7662944 ~ 7663874 (+) True G36638
TU49087 lncRNA upstream 655245 7543986 ~ 7547035 (+) False G36616
TU49261 lncRNA downstream 11420 8224258 ~ 8224772 (+) True G36745
TU49270 lncRNA downstream 26625 8239463 ~ 8241892 (+) True G36754
TU49271 lncRNA downstream 26625 8239463 ~ 8244446 (+) False G36754
TU49352 lncRNA downstream 192406 8405244 ~ 8407693 (+) True G36820
TU49358 lncRNA downstream 205466 8418304 ~ 8419581 (+) True G36826
XM_039797255.1 mRNA upstream 1593 8191703 ~ 8200687 (+) True rae1
XM_039797253.1 mRNA upstream 2785 8191703 ~ 8199495 (+) False rae1
XM_039796679.1 mRNA upstream 25232 8170682 ~ 8177048 (+) True LOC120556871
XM_039798063.1 mRNA upstream 59333 8140234 ~ 8142947 (+) True LOC120557574
XM_039798604.1 mRNA upstream 86249 7885752 ~ 8116031 (+) True cdh4
XM_039798532.1 mRNA downstream 20244 8233082 ~ 8236649 (+) True arpc4l
XM_039798872.1 mRNA downstream 116477 8329315 ~ 8334854 (+) True si:dkey-202e22.2
XM_039798873.1 mRNA downstream 116477 8329315 ~ 8334854 (+) False si:dkey-202e22.2
XM_039798875.1 mRNA downstream 116477 8329315 ~ 8334005 (+) False si:dkey-202e22.2
XM_039797936.1 mRNA downstream 237863 8450701 ~ 8453316 (+) True hmces
TU48863 other upstream 943330 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1563893 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 2149511 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 2277880 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 3268116 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 14924 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 404160 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 429192 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 498171 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 526129 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile