RNA id: XM_039798604.1


Basic Information

Item Value
RNA id XM_039798604.1
length 4646
RNA type mRNA
GC content 0.51
exon number 17
gene id cdh4
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7885752 ~ 8116031 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACGGTCATTCACTCAGCACCCGAAAGAGAAGAAACAGGGATCCGGGAATTACTGAGGTTAATTTGGCGCAGGAGACTCATCTctttcgctttttttttttacccccaaCAAGCGATTTTGCAAAGATGAAGGTTGGCTGCATCATCCTGGCTTGCACCTTACTTGTGGGCACATCCTCGGGGAGTAAGGCAGTCCAGCCCCTCAAACCCCCATGCAGACCAGGCTTCTCCCAGAACTTCTACACAGTGATTGTCTCGAGAGACGTACTGCACGGTCAAAGCATTGTCAAAGATACTACCCTGTCCAGTGAACGTGTGAAGTTTGAGGATTGCCAGCGCAGCAGAGAGGTGGGCTTTGTCAGCAGCGACCCCAACTTCAGTGTGAGGCCCGATGGGTCGGTGTATGCCGAGCAGGAGCTGGCCAACCTGTCAGAGCCCGTCCAGTTCATGGTGACGGCCCGAGGGCTCCATGACCCACACATCTGGGAGACCACCGTTAAGCTAGCCCTGGCCGGACATCCTCATCCTTTAGCCCTGACAAAGGGTGGCATTGAAGAAATGCTGTCAAGAGTCTGGGACTCTCAACCCAGAGTTATCAAGTTTCCTCGAAAACATCAGAGGAGCTCCTCTGCCAATGGGCTAAGGCGACAGAAGAGAGACTGGGTCATCCCGCCTATCAATGTGCCTGAAAACTCCAGAGGACCCTTCCCCCACATGCTTGTCAGAATCCGCTCAGACCAGGACAAGGCTGTTGGCATCCGCTACAGCATCACGGGAGCAGGCGCTGATCAGCCCCCGAGCGGGATCTACAACATAGACCCCATCAGCGGCAACATGTTTGTCACGCAACCCctggacagagaggagagagcctCCTTCCACCTGCGAGCCCATGCAGTGGACATGAATGGTAACCAAGTGGAGAACCCAATCGATCTATACATTTATGTGATCGACATGAACGACAACAGACCGGAGTTTCAGAACCAGGTGTACAACGGCTCGGTGGCTGAAGGGTCCAAACCAGGCTCGTCTGTGATGCAGGTGACAGCCACCGACTCGGACGACTCCACCACAGCTAATGGCATGGTGCGCTACCGCATCCTCTCACAGACTCCCCACACCCCCATCCCCAACATGTTCACCATCAACAGCGAGACTGGAGACATAGTTACAGTGGCAGCCGGCCTGGACAGAGAGaaagtgTCCCAGTATACCATCATTGTCCAGGCCACTGACATGGAAGGCAACTTGAATTTTGGCTTGTCCAACACAGCCACAGCCCTTATCAGCATCACCGACATCAACGACAATCCCCCAGAACTGACAGTCAGAACGTTTTCAGGGGAGGTGCCAGAGAACAAGGTGAATGTGGTGGTGACCAACCTCACGGTGGTGGACAGGGATCAGCCCCACAGTCCCAACTGGAACGCCGTCTACCGCATCGTCAGCGGAGACCCCTCTGGACACTTCACCATCCGCACCAACCCCATCACCAATGAGGGCATGCTGACAGTGGTCAAGCCGGTGGATTTTGAGATGAATCGTGCCTTCATGCTGACCGTGGTGGTTTCCAACCAGGCCCACCTGGCCAGCGGCATCCAGTCTTCTCTTCAGTCCACAGCAGGAGTCACCATTTCGATTCAGGATGTGAATGAGCCGCCCGTCTTCCCCGTCAACCCTAAGATGATCCGCTTTGAGGAAGGTGTGCCAGCAGGGACCACCCTTACTGTGTTCGCTGCTCAGGACCCTGACCACTTCATCCACCAGATTGTCAGGTACTCCAAGCTGTCCGACCCGGCTAACTGGCTGAAGATCAACAGGACCAATGGTCAGATCACTACCATGGCCCTGCTGGACCGAGAGTCCATGTACGTCAAAAACAACGTGTACGAGGCCACATTCCTGGCATCCGACAATGGTAAGTCCGGCTCGCCTCAAGCCAGCGGGACAGGAACTCTCCAGATCTACCTGATCGACGTGAACGACAACGCGCCGGTGCTGATACCCCGGGAGGCCCAGGTGTGCGAGCGCGCGCGCCCCAACTCCATGGTCAACATTACAGCCTCCGACGCTGACGCCGACCCCAACGTAGGGCCCTTTGTCTTCGAACTGCCTTCTTTTCCTGCAAGCGTTCGCCGCAACTGGACTATCTCCCGACTCAGCGGTGACTATGCTCAGCTGAGGCTAAGGATTCCTTACCTGGAGGCGAGTGTGTACGAGATCCCCATCATCGTGTCCGATTCAGGGAACCCTCCTCTGTCCAACCGCTCTGTGATTAGAGTCAAAGTTTGTCCCTGTGACAATAACGGAGACTGCAGCGCCACAGGGGCTGTGGCAGCCGCCGGCCTCGGCACCGGGGCCATCATCGCGATACTCATCTGCATCATCATACTGCTCAGCATGGTTCTGCTGTTTGTGGTGTGGATGAAGCGCAGAGAGAAGGAGCGGCAGGCGAAGCCCCTGCTGATCGACCCTGAGGACGACGTCAGAGACAACATCCTCAAGTAtgatgaggagggaggaggagaggaggaccaGGACTATGACCTGAGCCAGCTGCAGCAGCCCGAGTCTTTAGACCACATCATCAATAAGCCGGCGGGGGTGCGCAGGGTGGACGAGAGACCTGTGATTGCTGAGTCACAGTATCCCGTCAGACCCAGTCTGCCCCATCCTGGAGATATAGGAGACTTCATTAATGATGGTCTGAGGGCAGCAGACAACGACCCCACAGCTCCTCCCTACGACTCCCTGCTGGTGTTCGACTACGAGGGCAGCGGTTCAACCGCCGGCAGCGTCAGCTCGCTCAACTCCACCAGCTCAGGGGACCAGGACTATGACTACCTCAACGACTGGGGCCCTCGCTTCAAGAAGCTGGCCGACCTCTACGGGGGAGGGGACGATGACTGAGAGCGGAGCGGGGGGCCTGGGTGGGGCTGCGGCAGGGGTCGGGAGAGGCGGGGTCGGTTGGATGGACGCTCCTAGAAACCACTGGCAGGAGCCAAGAACATGACGCAGTCTCCATGGTAGACGTGTGAGGAACAGATCCTTACGTGAGCTGTGTTAGTTTGCTCACAGGGACCGAACCCGCAAAGATGAAGTTCCACTGCAACGCAACTGTATTCTGGCTTTATATTTTGTAGTGGCGAGTTTGTagtgtgatgtttttttcttcttttttttcctctttgttGTTCTCTCACCGTGCTGGACCCGGAGCTCTCTGGGGACGAATCAAGGCGGTCGTGAGAGACACGAGTAGTGAATTTGTGCTTTGATTGATTTTCAAAACGAAACCATCTCTTGCTTTAGTCTCACGCTGAAGAGAATGTTTATGCGAAGACgctctctgactctctctttcactctgtcaaCTTGAATTTCCTTAGAACAGAAGCACTGTCTTTTTTATAAAGTGCCTTTtgtggtgtgtttttgtatCAGACTCCTGCTATCTCAGGATCGGTTGCCATTCGTGCAGTACAGTGGAGGCGTGTTCTCTTGTCGCCCCCCCCCTGTGCTCCTCAAACCAGCCCTGCCTGTCAATTTCCTTTCCCCTTTACAGTGGTGCAGATTACAAACCCCAGCAGCCAGTCCCAGGAGAGAAGGACGCATCCAGGGCAGACTTTCGGACATCATAACCCAATGAATTATGGCCTAAAAGAAGCCAAtaacagttgttgttgttgttgttgttgttgttgtggggaAGACAACACTCTTCTCCAAGGACCTGCTCAGTTTGACTTTCACAAGCATCACCTGTCGACACACTGACATCGTGTGAGACCATTTTATACATGCGGGGGTTTTCTAATTTAGTGGAGAATGCCTGCCTTTCCTCTGTGGACTCATGCGTTTAGGAGCCTTTATGTTGAGATGCTTGCCTGCCCTGTATGGTTTTGTGTTGCTTTCTCCACAGTGTAAAGCTTATGGCATGATCTGATTAGTCAGACAGTTTAAGAAAGTGGAACTTGAAATGACTTGGAACAAAGGCATCTAAGAAAGGAATTTTTTTTGTCGCCTTGAACATTCCCGTTTTTTATAGGCCAACAAAACTATTAAAAGgtgcatgattttttttttctcaaaatgttttaCTCAAAGCACTTGTTACTATGTGGTGAGAATGTGAAAATAGTCAGCGGAAACTATATGAATATACTCTGTATAAAGAcactgagaaaataaaaaacctgTAAGATACCTATTTTTGAAGTATTGATGACATAACAGTTGCTGCTCTTTCTCTAGCTCTTCATTGGGCTTAGGGGATTTTTTGGCCCGTTCATTTTTAATATGTGgatatttttgtttctttgtcttcTGTTGAAGCATAATTCCATTTTTAAGACGCCTGCTTATACatgttttgtttcagttttgctcttcttttcttcttatgagattgtattctttGTTATACTCCTTTTATATGTGAAAACACAGCCCAACCCTTTTCACTCTGTAATGTCTCTGACAGACGTGTTCCTTCTGTTGGCCTCTGGCCTCGGGGCAGTGGAAGGTTCATTAGCCATGCCTGCTGATAGTTGTTCTATTATTCAGTGTCCTGGgattattttattcattcatctAGATACTGGATGTGTGCttcagaaaataaacaaaacttgttttgaaaa

Function

GO:

id name namespace
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06797 CDH4; cadherin 4, type 1, R-cadherin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU49149 lncRNA upstream 133115 7699642 ~ 7752637 (+) True G36649
TU49116 lncRNA upstream 221878 7662944 ~ 7663874 (+) True G36638
TU49087 lncRNA upstream 338717 7543986 ~ 7547035 (+) False G36616
TU49086 lncRNA upstream 339702 7543986 ~ 7546050 (+) True G36616
TU49078 lncRNA upstream 353549 7531717 ~ 7532203 (+) True G36609
TU49242 lncRNA downstream 28510 8144541 ~ 8146263 (+) True G36727
TU49243 lncRNA downstream 31896 8147927 ~ 8148229 (+) True G36728
TU49261 lncRNA downstream 108227 8224258 ~ 8224772 (+) True G36745
TU49270 lncRNA downstream 123432 8239463 ~ 8241892 (+) True G36754
TU49271 lncRNA downstream 123432 8239463 ~ 8244446 (+) False G36754
XM_039797588.1 mRNA upstream 116010 7762888 ~ 7769742 (+) True LOC120557341
XM_039797576.1 mRNA upstream 134632 7728149 ~ 7751120 (+) False LOC120557338
XM_039798063.1 mRNA downstream 24203 8140234 ~ 8142947 (+) True LOC120557574
XM_039796679.1 mRNA downstream 54651 8170682 ~ 8177048 (+) True LOC120556871
XM_039797255.1 mRNA downstream 75672 8191703 ~ 8200687 (+) True rae1
XM_039797253.1 mRNA downstream 75672 8191703 ~ 8199495 (+) False rae1
XM_039797256.1 mRNA downstream 86249 8202280 ~ 8212838 (+) False LOC120557172
TU48863 other upstream 626802 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 1247365 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1832983 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1961352 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2951588 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 111731 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 500967 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 525999 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 594978 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 622936 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile