rybpb (rybp)


Basic Information

Item Value
gene id rybpb
gene name rybp
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6035072 ~ 6055216 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU48489
GCTGAGTGGAGCCTGTCTGCCAACAGCTTCAGCAGCGGCTCTATCTGGAACCAACTACACTCACTGACAATTAAAGGAggcccttttttcttcttttttacgaGGACTATTCTTCACCATGGGCGACAAGAAGAGCCCTACCAGGCCAAAAAGACAAGCCAAACAGACTGCTGATGACGGCTACTGGGACTGTAGCGTCTGCACCTTCAGGAACACCGCCGAGGCTTTCAAGTGCAGCATCTGCGATGTGAGGAAGGGCACATCCACAAGGAAACCCAGGATCAACTCCCAGCTGGTTGCCCAGCAGGTGGCTCAGCAGTACCCGATGCCTCCCCCGCCTAAGAAGGAGCGAAGGGAGAGGAGCGAGCGCACAGACAAGGAGCGCCCGGACGGCGAAGGAGAGCGCGCCAACGGCGAGGGACGCCCAGAGGTTGAGCGTCCGGAGATAGCGAGCCCAGAGGGAGAACCTCCTGAGAAGGAAAAGAGCGACAATGAACAGCAGCCAGTCAAAGACAAACCCGACGGAAA
>XM_039797791.1
CAGTCGCTGTGCCGTGCCTCGAGCCAGCGCTGAGTGGAGCCTGTCTGCCAACAGCTTCAGCAGCGGCTCTATCTGGAACCAACTACACTCACTGACAATTAAAGGAggcccttttttcttcttttttacgaGGACTATTCTTCACCATGGGCGACAAGAAGAGCCCTACCAGGCCAAAAAGACAAGCCAAACAGACTGCTGATGACGGCTACTGGGACTGTAGCGTCTGCACCTTCAGGAACACCGCCGAGGCTTTCAAGTGCAGCATCTGCGATGTGAGGAAGGGCACATCCACAAGGAAACCCAGGATCAACTCCCAGCTGGTTGCCCAGCAGGTGGCTCAGCAGTACCCGATGCCTCCCCCGCCTAAGAAGGAGCGAAGGGAGAGGAGCGAGCGCACAGACAAGGAGCGCCCGGACGGCGAAGGAGAGCGCGCCAACGGCGAGGGACGCCCAGAGGTTGAGCGTCCGGAGATAGCGAGCCCAGAGGGAGAACCTCCTGAGAAGGAAAAGAGCGACAATGAACAGCAGCCAGTCAAAGACAAACCCGACGGAAACGTCCCCCCCGCAgcacagacccccccACATCTGTTTTCCTCTAGACCCAAATCAGACACCCATCAGAGCCCACccagtgacaaacacatacagtctGGCAAATCGGCAACCAAGACCAACAAGAACTCTCACATTTCCAGGCCCAAACTGAAGAACATTGACCGGAGCACCGCCCAGCAGTTGGCCATCACTGTAGGGAACGTGACCGTGATCATAACAGACTTTAAGGAGAAGACCCGCTCCTCCTCCACGTCCTCGTCCACCATCACGTCCAGCGCGGGCTCCGAACAACAGCACCAGAGCTCCGGCTCCGAGAGCATGGACAAGGGCTCGTCGCGGGCCTCCACACCTAAAGGGGATCTCTCAGTGGGGCACGACGAGTCGTTCTGAGGTCCTGTCCCTTTCCTCCTGTCCTCACCCCGCTTCAtcttcccctcctcccccctccttttttttctccaccccccccacccccccacgtTTCTGGACACTATGGATCCCATAGGGGGAGAGATTTCACCTTTCCCATCGCCGCCCTTCCTCCATTCCACGACCACCCCTGAATGCTGAGAGGAGCTGGATGCCTGAGAGGAACAATGTGGTGCGCCTGCCAGAAAACAAAAGcccttctgggggggggggaactccCCTCGTGGTTGCACCCGTGGCACAGGCGAGGAGAGCTGGGCTGCAAGGAATAACCCCCACAACCTCCCCCTGCGGTAGCATCCAGACACTTGTatgtattgttttatatttgtatgtGGATGTGAGGCCAAGTcgacatttgttttgttttttgtaaagaaGAATTTTCCGCTGGGCACAATAACCATCATTTCAATAACTTTAAACTATTATTACCCTTATTTATTACCTGTTGCACCTGTATACTTTGATATTCTACTTTTTATGTTGAAGCTTTTGCTGTGTAGCCCTGCCGATCAATCATTCCTTCAGTGTTTTTATTACAGTTTAAAGATGATAGGACAAGACTCgagacgcgcgcacacacacacacacacacacacacacacacacacacacacacacacacactggtgctAGATACACTGTGAAGCGGTTTTGCAGATCTGGGATTTCCCATTCATTCAATGTGACAGATTGCTGATAAATCAAATTCTCATTCACAATAACACTGTCTTACTCTGAACACTGTCAGGACCTCCATCAGGTCCATCTTGTTCTGTACAGGTCAATGTGCATCAGAAGAAGGGTCACCTGAGGTTCAGACACCTGACTTTTTCAACTAGACTGTCTATGATTTAGTATGCTATAGCAGATCTCTTATACAGTATCTTATGTCCTTAACTGTACAGTGTAGGCTGTTGTGTAAAACACTAAAAGCTGTTGATATTTTCTGCATTCCGTACTTGGATATTGAGTTTTCTGGCTGAAGCTAGAGCTGTTCTCTCAGCTCCTCAGCCAGAGTTTGTTCTGTGGTGACTGAAGGATGGTTACATGCAGTTCCACTTGGTAAAACCATATCGAACTGTAAAATAGACCTGTTGTGTCAAGCTGTTGTAAATCgatttcctttttctttcgTTGTGGTTCTGAAGACAACATTGAATCTTCTTTCTCTCAGCCTGATATCCCAGAAAACAAGTGCAAAGACATGAGGAATTCACAAAGATTGACAATTCAGTTAAagcttagttttttttaaatgaatttaaGACTCCTGTCATTGAAGGCAAAATAATATTGCAGTAGTTAATATAACACAATTGCTCTTTCAATTTTTAGAACAGCAAGGCTTATTTAATGGTTTTAATTCACTTTCACCTTAGCTGATACTAGACCAACATAATTTTCTTTAACTGTATGAAATTGTAAAAAGAATAAATGTGTATATGATATCttagttttatttattgaaGGACCAAAGGAATTTCATAATGACATGATACATAGACAGATACATAACAATTtgaaatgcaattatctaatgtGTGAGATGAATAACAGTTTAAATAAAGACTAATATAATCCA

Function

symbol description
rybp Predicted to enable DNA binding activity and transcription coregulator activity. Involved in several processes, including histone H2A monoubiquitination; negative regulation of proteasomal ubiquitin-dependent protein catabolic process; and positive regulation of transcription, DNA-templated. Located in nucleoplasm. Colocalizes with PcG protein complex.

NR:

description
PREDICTED: RING1 and YY1-binding protein

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11469 RYBP; RING1 and YY1-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU48489 False 528 TUCP 0.57 3 6035100 6052769
XM_039797791.1 True 2574 mRNA 0.47 6 6035072 6055216

Neighbor

gene id symbol gene type direction distance location
shq1 shq1 coding upstream 21118 5957271 ~ 6013954 (+)
pdzrn3b pdzrn3 coding upstream 129909 5793732 ~ 5905163 (+)
cntn3b cntn3,LOC100696343,LOC102785363 coding upstream 370019 5610010 ~ 5665053 (+)
LOC120556975 LOC103365933,LOC100695288,LOC105934533 coding upstream 991595 4956351 ~ 5043477 (+)
rpn2 rpn2,LOC102784465 coding upstream 1131382 4893449 ~ 4903690 (+)
LOC120557997 eif4e3,LOC103355441 coding downstream 63416 6118632 ~ 6132639 (+)
eevs LOC104922196,LOC103355445,LOC104966975,LOC105934428 coding downstream 359750 6414966 ~ 6426594 (+)
LOC120556937 LOC103355436 coding downstream 411600 6466816 ~ 6521161 (+)
trnt1 trnt1 coding downstream 474235 6529451 ~ 6537424 (+)
si:dkey-178o16.4 LOC103355435,LOC104921970,LOC104952562 coding downstream 482325 6537541 ~ 6541431 (+)
G36170 NA non-coding upstream 13949 6020853 ~ 6021123 (+)
G36145 NA non-coding upstream 340126 5694393 ~ 5694946 (+)
G36114 NA non-coding upstream 594463 5438157 ~ 5440609 (+)
G36106 NA non-coding upstream 756390 5276453 ~ 5278682 (+)
G36105 NA non-coding upstream 800481 5234383 ~ 5234591 (+)
G36175 NA non-coding downstream 28 6055244 ~ 6056226 (+)
G36201 gpr27,LOC103355443,LOC102784210 non-coding downstream 56461 6111677 ~ 6114313 (+)
G36231 mitfa,mitf-a,LOC100534525 non-coding downstream 374291 6429507 ~ 6433109 (+)
G36288 NA non-coding downstream 488251 6543467 ~ 6544074 (+)
G36299 NA non-coding downstream 518930 6574146 ~ 6574347 (+)
G36156 LOC103374102 other upstream 110672 5920924 ~ 5924400 (+)
cdk5rap1 cdk5rap1 other upstream 1100908 4911699 ~ 4934164 (+)
G35921 NA other upstream 1449597 4487535 ~ 4585475 (+)
LOC120557928 NA other upstream 1502210 4529833 ~ 4532862 (+)
G35791 LOC101072424,LOC104921976 other upstream 2084944 3948834 ~ 3950128 (+)
prok2 prok2,LOC103355444 other downstream 49397 6104613 ~ 6107152 (+)
foxp1b foxp1 other downstream 84247 6139463 ~ 6306143 (+)
setmar LOC100698471 other downstream 580064 6635280 ~ 6638523 (+)
si:dkey-245f22.3 NA other downstream 1127983 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 1154780 7209996 ~ 7272368 (+)

Expression


Co-expression Network