si:dkey-245f22.3


Basic Information

Item Value
gene id si:dkey-245f22.3
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7183199 ~ 7187214 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU48831
AGCCAACTTATAGGGGcaagaccatagactgtaacagTCTATGGGCAAGACACAAATTCTACCTGTTTATGGTTAACAATGTCAATGTTAGCACTCAAATATGTCATGGTAAGACATGGTTAATATCATGGAGAGTGATTAAGTATGAATGGAAACAGCTGAccatacagtgctgctcatgagtataggaacccatgctaaagttgactaaaaagaggaataaaaaaatcatcttttggaaattgatcttaatgccttaattgaaaaaattaggggaaaaaaaagaaaagagattggcatggggtactttccataaaatcatctctcactgcaaatcaaaccagctattaggctaactgaaataaaacaatgccaatctctaggtatggtgtatgtgatgatgtggggctattttaattccaaaggccaagggaactttatcaggatgcatagtatcctggatcaatgaaataactggcctttaaaaataaaaatctgcctgcctctatgggaatttaacataggggtgtactgacttatgccccctgtattataaggaagaacatttatttatttacaatacattattcattcacaatgAAAATTGaagtccttaaaggttggatttttcctaatttttttaattaaggcattacgATCAATTTcgaaaagataatttttttattcctctttttagtcaacttcagCATGGGTTCTtatactcatgagcagcactgtaggTACTTAACCTTATGGGACTGGGAGCAATGCAAATAGCACTGAGCTATGGAGTAGAGCAGCTTTTAGCTCAAAAACAAAGTACGTACATGTAAGCTCTGAATGACCTGGACACCTTAAAATCACTGTAACCACCAAATGTTTTGATGTTTAAATGGTATGTATATCAATAATTTAGGAGGTTGTGTTggaagtaaaacaaaaacaactacacTTATgccagaacttttttttttaacacacatTCATTAACATAAGGTTGCATTGAGCATCTGACAAATTAAATGCCTTTCTAAACTCTGTGGCTATTTTATTGAATAATAATTGCATTGCAGGTTTCACACAACAAACAGTTATACGTTATCATTACAGACATGAGGCTAGTGGTTGGTTTAAAAGAAGGCCAAAGCCCTCTGAGTTCATACTACAATGTCTAGCAAGAATGCATTATTAGATATATTACTTTTGATcgtcaaagaagaagaagccacAATCTTGGTAGAACATGCTAACCAGTAAAATCACTCAGTGACCGCCAAGGTTAACAGGGACAAACAATCACTGACAACATAGAGATTAGTCAGGAGAAACTACTTCTCAAACTATTATTCAGGTATCAAAAAACTAATGCAATGAACTACAGTACTAtagtaaaaagttaaaattgtTCTGCATTTCTCATACTGCCTTACATTTCCACTGACAGTGTGaatatattcaaaaataaaatgcttaCTTGTAATTTGTAGCTACTCTGGCAGAAGTCCTGCTTTGGCTAactagctgcagcagcaagtGATTTTCCATTGCTTTTAAGGTTCATTACAAATACATGTAACCTGGGCATTAGCTGTCCACTGTGTTCTGTGATagtaataaaaacagacaaaagctCTCATAAAATGCATAGACTAGCCATAAAATAAGGTGCAATAATATtgctcaaaataaaatattcttaTATACAATATGCAGTAAATATTTAACAATGTGCCAATTCCCCTAACAAAGATCCCTTCTGTAGCTGCTGGTGAAACAACCCAACATTGATGAGCATGCGACTGCTATTATTAAACCCTGATTCCAGTcagttaaaaaacacacacac
>TU48832
gcagcactgtaggTACTTAACCTTATGGGACTGGGAGCAATGCAAATAGCACTGAGCTATGGAGTAGAGCAGCTTTTAGCTCAAAAACAAAGTACGTACATGTAAGCTCTGAATGACCTGGACACCTTAAAATCACTGTAACCACCAAATGTTTTGATGTTTAAATGGTATGTATATCAATAATTTAGGAGGTTGTGTTggaagtaaaacaaaaacaactacacTTATgccagaacttttttttttaacacacatTCATTAACATAAGGTTGCATTGAGCATCTGACAAATTAAATGCCTTTCTAAACTCTGTGGCTATTTTATTGAATAATAATTGCATTGCAGGTTTCACACAACAAACAGTTATACGTTATCATTACAGACATGAGGCTAGTGGTTGGTTTAAAAGAAGGCCAAAGCCCTCTGAGTTCATACTACAATGTCTAGCAAGAATGCATTATTAGATATATTACTTTTGATcgtcaaagaagaagaagccacAATCTTGGTAGAACATGCTAACCAGTAAAATCACTCAGTGACCGCCAAGGTTAACAGGGACAAACAATCACTGACAACATAGAGATTAGTCAGGAGAAACTACTTCTCAAACTATTATTCAGGTATCAAAAAACTAATGCAATGAACTACAGTACTAtagtaaaaagttaaaattgtTCTGCATTTCTCATACTGCCTTACATTTCCACTGACAGTGTGaatatattcaaaaataaaatgcttaCTTGTAATTTGTAGCTACTCTGGCAGAAGTCCTGCTTTGGCTAactagctgcagcagcaagtGATTTTCCATTGCTTTTAAGGTTCATTACAAATACATGTAACCTGGGCATTAGCTGTCCACTGTGTTCTGTGATagtaataaaaacagacaaaagctCTCATAAAATGCATAGACTAGCCATAAAATAAGGTGCAATAATATtgctcaaaataaaatattcttaTATACAATATGCAGTAAATATTTAACAATGTGCCAATTCCCCTAACAAAGATCCCTTCTGTAGCTGCTGGTGAAACAACCCAACATTGATGAGCATGCGACTGCTATTATTAAACCCTGATTCCAGTcagttaaaaaacacacacac
>XM_039797955.1
ACACCTTCAGGTCACTGAAGGATGTGTCTGTGCACTGTGTCTGCTGCATGCTGGGTCGCCTACTTCTAAAATATGTCATGAAAAATGCCCACTCATCACGAACAGCTGAAACCTCAGCTACAGATCTGACTCTGAATCTGTGATCTCCATAGAGAATGATGATGtttctttttacattaaatAATTAAAAACTGAAGCAGGTGATTTAAGTGGATGCCACAATGGATGTCAAACTGGATTCGACAGATATGAATGAAAAGATGGGTGATGGAAGTGAAGGCAAATCAAAGTTCCATGACTCACTAACTATTGCCTCAAAGCTGCCCATCATACCTGACAACTCTATCGCAGGTCCAACAGGATCTTTGACTGAAGTCACCAGTTTTTCAGAGCAGATCTCCACCGAGGACACAGAATTATCTTCAACTGTGAATGTATTCCCCAAAGTAATAGAAATCAACCTGCCTGATAACCTAAAAGGTGGAGTGACCAGAGCAGTATCCATCTGTGGGCCATGCTCTGTGGAGCAAGAGCAGCCAAAGCCTCTATGTGCCCTGCTGCCTTCCTCTATGGAGGCCTGCACAGTCTATGAAGTGAGTCAGTCAATCACATCAATCAGCAGGAGTCAAGAAAGCCTCAAAATCACTACTGTCCGCACTGAGCCAGATGGTGATGACCTTTGTGCTGCAATCCTTTTGGCCTGCCTCTTCTGTCATCCATTGGACTGTTTATTGGCCATGATGAGAGGATGTAACGAGTGTGTTTGGTCGCTATGCTCATCCCTGTGCGGCTGCGAGCTCCGCACCCTGCAGCCTCTCTTGGACATCACCCACCACTGTGACCTCTGTGGGTGTCTGGGTGTTCGCTGCTTCCTGTGCGACTGTCCTGCCTGCGACATCTGCCTTCAGGCTACAGAGTGCCTGGACCTCGCTCTGGAATTCTCTCAAATGCTTTACCACTAATGCTGACTGTCAGCAAATAACCACATCCAGACATAAACCAATGGGAatcatttatttgttaaaatCTTCCAAAAGCCAACTTATAGGGGcaagaccatagactgtaacagTCTATGGGCAAGACACAAATTCTACCTGTTTATGGTTAACAATGTCAATGTTAGCACTCAAATATGTCATGGTAAGACATGGTTAATATCATGGAGAGTGATTAAGTATGAATGGAAACAGCTGAccatacagtgctgctcatgagtataggaacccatgctaaagttgactaaaaagaggaataaaaaaatcatcttttggaaattgatcttaatgccttaattgaaaaaatt
>XM_039797957.1
ACACCTTCAGGTCACTGAAGGATGTGTCTGTGCACTGTGTCTGCTGCATGCTGGGTCGCCTACTTCTAAAATATGTCATGAAAAAAACTGAAGCAGGTGATTTAAGTGGATGCCACAATGGATGTCAAACTGGATTCGACAGATATGAATGAAAAGATGGGTGATGGAAGTGAAGGCAAATCAAAGTTCCATGACTCACTAACTATTGCCTCAAAGCTGCCCATCATACCTGACAACTCTATCGCAGGTCCAACAGGATCTTTGACTGAAGTCACCAGTTTTTCAGAGCAGATCTCCACCGAGGACACAGAATTATCTTCAACTGTGAATGTATTCCCCAAAGTAATAGAAATCAACCTGCCTGATAACCTAAAAGGTGGAGTGACCAGAGCAGTATCCATCTGTGGGCCATGCTCTGTGGAGCAAGAGCAGCCAAAGCCTCTATGTGCCCTGCTGCCTTCCTCTATGGAGGCCTGCACAGTCTATGAAGTGAGTCAGTCAATCACATCAATCAGCAGGAGTCAAGAAAGCCTCAAAATCACTACTGTCCGCACTGAGCCAGATGGTGATGACCTTTGTGCTGCAATCCTTTTGGCCTGCCTCTTCTGTCATCCATTGGACTGTTTATTGGCCATGATGAGAGGATGTAACGAGTGTGTTTGGTCGCTATGCTCATCCCTGTGCGGCTGCGAGCTCCGCACCCTGCAGCCTCTCTTGGACATCACCCACCACTGTGACCTCTGTGGGTGTCTGGGTGTTCGCTGCTTCCTGTGCGACTGTCCTGCCTGCGACATCTGCCTTCAGGCTACAGAGTGCCTGGACCTCGCTCTGGAATTCTCTCAAATGCTTTACCACTAATGCTGACTGTCAGCAAATAACCACATCCAGACATAAACCAATGGGAatcatttatttgttaaaatCTTCCAAAAGCCAACTTATAGGGGcaagaccatagactgtaacagTCTATGGGCAAGACACAAATTCTACCTGTTTATGGTTAACAATGTCAATGTTAGCACTCAAATATGTCATGGTAAGACATGGTTAATATCATGGAGAGTGATTAAGTATGAATGGAAACAGCTGAccatacagtgctgctcatgagtataggaacccatgctaaagttgactaaaaagaggaataaaaaaatcatcttttggaaattgatcttaatgccttaattgaaaaaatt

Function

NR:

description
PREDICTED: uncharacterized protein LOC107749521

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48831 True 1846 lncRNA 0.35 1 7185369 7187214
TU48832 False 1118 lncRNA 0.35 1 7186097 7187214
XM_039797955.1 False 1306 mRNA 0.44 6 7183199 7185639
XM_039797957.1 False 1202 mRNA 0.45 5 7183199 7185639

Neighbor

gene id symbol gene type direction distance location
LOC120557474 traip coding upstream 92447 7082265 ~ 7090752 (+)
sema3fb LOC103371090,LOC104933620 coding upstream 241587 6882145 ~ 6941612 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding upstream 396932 6775726 ~ 6786267 (+)
LOC120556653 naaa coding upstream 412924 6767012 ~ 6770275 (+)
bhlhe40 bhlhe40,LOC104959416 coding upstream 422717 6756944 ~ 6760482 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding downstream 125520 7312734 ~ 7317082 (+)
mafbb mafb,LOC104945735 coding downstream 148252 7335466 ~ 7337312 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding downstream 174726 7361940 ~ 7377650 (+)
snai1a LOC104939346,LOC103358824,LOC108244374,LOC107385873 coding downstream 225575 7412789 ~ 7416280 (+)
myh7ba LOC103358826,LOC104966023,LOC101480568,LOC102289245 coding downstream 246996 7434210 ~ 7449018 (+)
G36431 mbd1 non-coding upstream 28704 7152803 ~ 7154495 (+)
G36426 NA non-coding upstream 34508 7147991 ~ 7148691 (+)
G36424 NA non-coding upstream 36149 7146117 ~ 7147050 (+)
G36412 NA non-coding upstream 57571 7124942 ~ 7125628 (+)
G36411 NA non-coding upstream 59680 7123300 ~ 7123519 (+)
G36450 tfe3,LOC103365907,LOC104939489 non-coding downstream 4802 7192016 ~ 7192490 (+)
LOC120557301 NA non-coding downstream 38416 7225630 ~ 7232470 (+)
LOC120557300 NA non-coding downstream 55148 7242362 ~ 7258077 (+)
G36469 NA non-coding downstream 85240 7272454 ~ 7272800 (+)
G36470 NA non-coding downstream 85867 7273081 ~ 7273879 (+)
setmar LOC100698471 other upstream 544676 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 877056 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 1076047 6104613 ~ 6107152 (+)
rybpb rybp other upstream 1127983 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 1258799 5920924 ~ 5924400 (+)
G36458 LOC100304472,LOC107385856 other downstream 22782 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 101693 7288907 ~ 7306343 (+)
G36744 NA other downstream 1040548 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2573019 9760233 ~ 9856656 (+)
G37197 NA other downstream 3117973 10305187 ~ 10309996 (+)

Expression


Co-expression Network