arl8bb (arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426)


Basic Information

Item Value
gene id arl8bb
gene name arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6775726 ~ 6786267 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798415.1
TCACATGATATGACAAGGCAGCTAGCTACTTCCTATGTGGACAGCTAGCCAGTTCACATCCAGACTGCTACACAGAGACTGCGACTACCTTCACATCCAAGATGCTGGCCCTCATAAACAGGCTTTTGGACTGGTTCAGGTCCCTCTTTTGGAAAGAAGAGATGGAGCTTACATTGGTGGGACTTCAGTACTCTGGGAAGACCACATTCGTCAATGTGATTGCATCGGGCCAGTTCAGTGAAGACATGATTCCCACAGTCGGTTTCAACATGCGGAAAGTCACTAAAGGCAATGTGACAATAAAGATATGGGACATAGGGGGACAGCCTCGCTTCCGAAGCATGTGGGAGCGCTACTGTCGAGGAGTCAATGCTATAGTTTACATGGTGGATGCTGCAGACCGAGAGAAGATAGAAGCTTCCAGAAATGAACTGCACAACCTTTTAGACAAACCACAGCTACAAGGAATTCCCGTTCTAGTACTGGGCAACAAACGAGACCTACCCAACGCACTTGATGAGAAGCAGCTGATTGAAAAAATGAATCTATCTGCCATTCAGGACCGAGAGATCTGCTGCTATTCTGTCTCCTGCAAAGAGAAGGACAATATAGATATCACGCTGCAGTGGCTCATCCAGCATTCAAAGTCACGGAGAAGCTGAAAATGAAGCGCCCTGCCCCCCAGTTGCAGCTCTGGCCTCAGCCCCCTAATAGTCATGGGACCTCGACAGCCATCCTTTCCACTGCCTCTGTGAAGTAATTCCAGCTATCTGCCCACTACCGTCAGCACCTGCACCACCCAGTACACTACCATAGATGTGTAGCCCCTGTACAGCACTACCGCCACCCCAACTATCTGGAGTCTTGAAAAGTTGTTTCAGTACTGTGCTAGAAGGTGGATTGTCTACCCATCATGCCTTATCGCCAGTCATTACAGACATGCTTcgtgtttgttttaaaaaaattcttTTAATAGCTTCTGTTCCCTTTGAAACAAGAGTCTAAAGGCCTTTTTTTAACAGTCGCCGTTCCCGACCTGTCGCGCGAcattgtgacgtcaaaatgacgtagctCTCGCTGGCGTGCCAGGATTTAAAGTACcactctattttattttttttcagcggctcgcgacaaagcggaaacaggacgCATGGACGAGTTCTCTCGTAAACCTACtgggttaacccttgtgttggaaggacaacacaagggttatgtacttccgtttactgtgttgagaattgctctctaaacccggTCTCttgttaagtaagtaaagtttatttctagagaaCATTTAAACAccgtttaagctgaccaaaatgctgtacagaaaagcactaaggtgctgtataagAAGAGTTctgttatggtgaatgaaaggcttgatccgacgaaggAGGTCATCGAATCGTTGTGCAGACATTCTGAAGTAGTCTATCATCCTCATTTGTCTCACGAGGATATTGAGCTCACCATATTTGTGTTTGGCGTTACTCAAAGGATGAACATTCcaccttctttttctttgtgttttttttttgcaagcaGGCTCAAAAGCAGCTGTTCTTCCTCATCCATTGACTCCGAATTTATCATCTTAtcctagtccgtagaaatagcaaaagtcggtagcctttcctcagttgcgacacctctgttcaggagaagacggCAACTAGTGTCGCGCCTGCCACGCGTGACTATAAAcagttacggcgctcccatgacgtcacactgtCGCGCGAATGGCGAGTATACTGCACGTTTAACGATGTTACAGTGCGCTGTCCCCCCAGCTACACTAGGACGGATCtggtctggctatcaccagaccaagctcaatcttctaagattgaacattagtctggggagtgtGCTCTGACTATTCTACTgtacaagaggcgtgatcaacgggcatagttcaaatgactctgtgcGCAGTTGGGTTgaagtccttcaaccaatcagaccaacgtagcagcgacagcggcatcaacgggttgctgcgcttcggtggccgctatgttgaatgtaaacaagaagctgcttggtcgcttctctctCGCCACCGTGATAACcagccaatagcgcgccaggtggataagccagtttgtgattggtccccgcaaaattgtaacggaagcaggatagataaacgtacaggcttccagcctgagctgcaggacggaatcaaatcgccggcagatcgggctgggtttacccggTCTAGGGTGGACCTCCTCCACATTTAAACATCCGTTCTGTTGCTTGTCAACATGTGGTGTTTACGTGACAAGGTTGTGATTGTAGTTTTTAACAGTTATTTGCCAAATGATGAGCTTGTGctaataccttttttttattttttattcttgatTTAAATCTTCGCAATATAGCCTGCATTTTATTTGCTGGCGTGAGaaagtatatattttatgaAGTGACTACAGTCAAAGTTTACACATAAGGTGAAGATGAATAGAAGGTAAGACTGTGAATGGTTTTGTCCGAGGCAAAATCCTAAGATAGGTCAGCAGAGTTTTAAGTGCCTTCGGCTAAGTGTGCGTTCCAATCAGATTGCCCAATGCAACTTCTAACCCACTATTATAAATAAACACTTTTTACAGCCGCAACATAAATCTCCTTGATCACACTTAACCCCACCCCTCGACGATCTCATTTTATGTTTTCTAATCTCATGCTCTCATGCGtattatgtctaaaaaaaaaaataaaaaaaaaagagagaaagaaaaatgagAAATGAAGTTATGGTTGATGTGAGGTGAATGAGAAAATATTACATTTGGTTTGGGTGGTGTGTACTTTGAATGCTGTTTCACGTGAAGCCTGTGACACTTTAATGAAGCTTGAAATGGGGGCTAACTTTTTTTCTTGCAGTTCTCAGGTTGTTaaaggatttttttaaatattttttttacattttttttttttaattgtctgaACACAGTATGGGTGTGCCCAAGTGTTTCAAAATCCCCATTTTGTCCGGGTTGGATAACAGAAAGCCAGTGTTAAGTCATGATGACTGAGCTTATGGAGAACGGAAGACAGTCCATTAGTTCCAAGCGTCGGATGCTGGATGTCATCCATGGCTTGCCACGCCCTTTGTCTCAAGCCTGATGTCTTTTTGTAGAAGCCTTAGCAGCCCGAAGGACAACACTGTCTCATCTAAAAGCGATGTATTGATCATTTCCTTTGAGCGACAAGACAATGATTTGTCACAGGTTTGATTACAGATTGATTATTAAACTGCCCCTTTGCTTGGCCAGTGCTTCTTGATCAATTTATCAAGTATTTTTGTGTGCGAGTGTTGCTGGAGGACAGTTATCCCTTGTGCTACAATGCTGTATGGCTACGTGGCTTCtgcattttactgtaatgtttTCTACAAATCCATCGCACACTTTACTGTCTGTTATCTCACATGTTCTGCGTCTGTATCGTCGTAAATCCTAAATGTCGATTGTTGGGACCGCAGCAGTGAGGGGCTGTCAAATTTGGGTGACTGTGGGTTATTTGGGGAAAAAGCTTTGTTACCTGTGTAATAATATAGCCTATTTGTATGTGCATGTGCTGAACTTGCTGAACACATTCAATCGCAGACTTTGTAAATAAGATTAGCATTTTTATTTCACCAAATGCTCTCCTGTAGATGTCATGCATTCTTTCCCTGTGATTGCTAAtaaatttgtgttttatttttaaggat

Function

symbol description
arl8a Predicted to enable GTP binding activity and GTPase activity. Predicted to act upstream of or within protein transport. Predicted to be located in late endosome membrane and lysosome. Predicted to be active in lysosomal membrane. Orthologous to human ARL8A (ADP ribosylation factor like GTPase 8A).
arl8b Enables guanyl ribonucleotide binding activity and tubulin binding activity. Involved in several processes, including calcium ion regulated lysosome exocytosis; lysosomal transport; and vesicle fusion. Located in cytolytic granule membrane; midbody; and spindle midzone. Colocalizes with lysosomal membrane.

NR:

description
PREDICTED: ADP-ribosylation factor-like protein 8B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0007059 chromosome segregation biological_process
GO:0005765 lysosomal membrane cellular_component
GO:0005819 spindle cellular_component
GO:0031902 late endosome membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07955 ARL8; ADP-ribosylation factor-like protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798415.1 True 3739 mRNA 0.44 7 6775726 6786267

Neighbor

gene id symbol gene type direction distance location
LOC120556653 naaa coding upstream 5451 6767012 ~ 6770275 (+)
bhlhe40 bhlhe40,LOC104959416 coding upstream 15244 6756944 ~ 6760482 (+)
itpr1b LOC102304252,LOC102203222,LOC100692694,LOC103355429 coding upstream 22096 6648315 ~ 6753630 (+)
lrrn1 lrrn1 coding upstream 156511 6605370 ~ 6619215 (+)
si:dkey-178o16.4 LOC103355435,LOC104921970,LOC104952562 coding upstream 234295 6537541 ~ 6541431 (+)
sema3fb LOC103371090,LOC104933620 coding downstream 95878 6882145 ~ 6941612 (+)
LOC120557474 traip coding downstream 295998 7082265 ~ 7090752 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding downstream 526467 7312734 ~ 7317082 (+)
mafbb mafb,LOC104945735 coding downstream 549199 7335466 ~ 7337312 (+)
si:ch211-232b12.5 LOC104939380,LOC103365892,LOC100697406,LOC102796719 coding downstream 575673 7361940 ~ 7377650 (+)
G36353 NA non-coding upstream 2556 6772736 ~ 6773170 (+)
LOC120556885 NA non-coding upstream 194423 6578980 ~ 6581303 (+)
G36299 NA non-coding upstream 201379 6574146 ~ 6574347 (+)
G36288 NA non-coding upstream 231652 6543467 ~ 6544074 (+)
G36231 mitfa,mitf-a,LOC100534525 non-coding upstream 342617 6429507 ~ 6433109 (+)
G36368 NA non-coding downstream 161812 6948079 ~ 6951049 (+)
G36369 NA non-coding downstream 167185 6953452 ~ 6953907 (+)
G36370 NA non-coding downstream 169266 6955533 ~ 6955855 (+)
G36408 NA non-coding downstream 328182 7114449 ~ 7117220 (+)
G36409 NA non-coding downstream 333629 7119896 ~ 7121438 (+)
setmar LOC100698471 other upstream 137203 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 469583 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 668574 6104613 ~ 6107152 (+)
rybpb rybp other upstream 720510 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 851326 5920924 ~ 5924400 (+)
si:dkey-245f22.3 NA other downstream 396932 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 423729 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 502640 7288907 ~ 7306343 (+)
G36744 NA other downstream 1441495 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2973966 9760233 ~ 9856656 (+)

Expression


Co-expression Network