bhlhe40 (bhlhe40,LOC104959416)


Basic Information

Item Value
gene id bhlhe40
gene name bhlhe40,LOC104959416
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6756944 ~ 6760482 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039798871.1
CTCAAGCCGAGAGACGTGCCTGCAGTCACAGGGTTTATTTAACACGTAGTCAGAACCCTCCCAGCTCACACGTTGAGCCGGGCGTGGAGCTTCCCTAGACAGGCTACTATACCGACCGACCGACCGAGTCCGGACCTCAGTGACAACACTGCGCAGTGCCCAACTCCAGCTCACAGCGGGAACACACacgcactcgcacacacacacacacacgcactggaTATCTGgagacactttttttctttatttatttgcatgattttttttctcatttcgtTTTCGCGTTTTGAACAGCGAGTGCAGATATACATTTTTGGGACCTTTTAAGGATTTTTGAAGTTATTTCTTCGGGTTTTACAGTCAAGCAATATGGAGAGAATTACCAGCGAACAACCACCTCCCTGTGCGCCAAGACACCCACCACTGGATATAGCTGACATGCAAGGAATCGATTTTCCCCTGTATGTGTACAAACCCAGGAGGGGCATGAAGCGTGTGGATGAGAGCAAGGAGACGTACAAGTTGCCACACCGACTGATCGAAAAGAAAAGACGTGACAGAATCAACGAATGCATTGCCCAGCTGAAGGATTTGTTGCCAGAACATCTTAAGCTTACAACGCTGGGTCATTTGGAGAAAGCCGTGGTGCTGGAACTCACTCTCAAGCACGTGAAAACCCTGAATGGTGTCCtggagcagcaacagcagaaaaTTATCGCGCTACAGAACGACCTGCAAATAAGTGACCATGGAGGCGACAGCGCAGAGGGCAGTGAGGAGATGTTCCGCTCCGGCTTTCACTTGTGTGCGAAAGAGGTCCTCCACTATCTGGCCAGCCAAGAAAGCAGCAAGGACTTGACCCCTTCCCATGTCATCAGCCACATCCAAAAGGTAGCAGCTGAGGTCCTGCATCATCAAAGCAGCCAACGCCCAGCCGTGTCCGTCCCTCAGTCTTCGGAGAGACCGAAGAAACCCGCCGGAGAGCCTCAAAGGGCGCACGAGGGCTCGGCTAAGAACTGCGTTCCTGTCATTCAAAGGACTTACCCGAATGCGACGGGGGAGCAGAGCGGCAGCGACACGGACACTGACAGCGGCTACGGGGGAGAACCTGACAAGCGTGACCCCAAAGCCCAGTGGTCAGAGAGCCACGCGAAGGAGGGGGAGCGCAAGTATGTCGCGTCTGAGAGGACGCCCGGCGTCATCAAGCAGGAGGATGACGAGCCTCGGGCCAAGAAATTACGGTCGGAATCCCCAGAAGACGACGTTCTCTCTGGTCACATGGCTGGAAGCTCCGGCAGCTATATGAGTTTCTCCCCCAACCAGCCCCCGTTTTGTCTCCCCTTCTACCTCATCCCCCCTGCAGCGGCGGCCTATCTGCCCATGCTGGAGAAATGCTGGTACCCCGGGAGCATGCCGGTTATGTACCCGGGAATGAGCGGCTCTACGGAGACACATCCCTCGTCTCTGCTGATGTCCCCAAGGACAGGGTCTCCAGCATCCTACCAGAACCCCATGGACTCCCCCGTTCTTCACAAAGCTTTAAAGCAGGTCCCCTCGTTAAACTTGGAAACTAAAGACTGaacagatgtttgttttttttctttctgttggaATCTTGCCCTCTGAATGTTCATGGGGGTTGAAAAGAgggtaaacaaacacaaatgcacCGGTATCCGTTCAAACCACTGTCGTTGTTTGGCCCATCAGAAcattgaccccccccccccgcccaacGCCCATCGAAGACCCCAAATGGTCACTGTCGTCTATCATCGGCTCCTCACACACTGAAACAGGACTTTCAGGGGCAACCGGGAGTGCCCACCTGCAAGCTCATAGATCACCTGTTGCATGGCGCTGAAACACTGTGAAGATCAGTTTAGAGACGACGAGTGCGCGAGAGATTGCgagagttctttttttttttttttttttagtaaggTTCGTCTACTCAGTGTTGAATGTCGGAGGCAAACACAGAATGTAAGGCACAGATAAGCCCACCCCAAAATGATTTGGACCTACTTTTTGCACACACGCCACTCTGTGATGAATGTAAAGATTGAACAAAAGTCCCTTGTAGATGCTGCTTGAATTATTATTACCTACTGTAGATCTGTGAATGGAGGATCTACCTTTAGTGTTTGTGTTCCTGTAACTACAACAAACCATTGATTAGACTGGAATGttaccaaaaaaagaaagaaaaagaaaaaaatgtcacaaaagacTTTGTTCCTTAGATCCTTCAATTAACTTGCAGCTAAATGAACACAATGTTCGCCGTGTTCAAAGAATTCAGGGTGTTGTCACTGTACAAGGTGTGTCACTCATGTCAGTTTAAAAGTGATGTGGCCATACCTGCTTTTATGATTTCATTTGTGACTCATGACTATATTTGCATCTAGATGGAGTTCCTGTGAAGTGATGTCTCgtaattatttttgtttatacTACTTCATACATCTATTTTTGATACGTGACCCATTGAGTGTACCTGCATCACTACCAGAGGAAGGTTGAGGTAGTCATGTGCTGTATGCCTAGAGGACGTGTACAGTATATAGCATTGTGCTCAACCAGATTTGCATCTTGCCCACAAATTCCCAGTCAAGTTAAGGCCTGATCTTAGCTCATGCTGTTGCCTTTACTCATATAACGCAGACACAACGATGACAGctgtttaaatgtattttgctTTAAATGGTGTGTCTGTTGCAAAGGGAGCGAATGTAAAGttcaaacaaaaataatagttttgtattaaaaaaaaagaaagaggta

Function

symbol description
bhlhe40 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within circadian regulation of gene expression; locomotor rhythm; and negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in several structures, including cardiovascular system; digestive system; immature eye; nervous system; and pleuroperitoneal region. Orthologous to human BHLHE40 (basic helix-loop-helix family member e40).

NR:

description
class E basic helix-loop-helix protein 40-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K03729 BHLHB2, DEC1; class B basic helix-loop-helix protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039798871.1 True 2787 mRNA 0.48 5 6756944 6760482

Neighbor

gene id symbol gene type direction distance location
itpr1b LOC102304252,LOC102203222,LOC100692694,LOC103355429 coding upstream 3314 6648315 ~ 6753630 (+)
lrrn1 lrrn1 coding upstream 137729 6605370 ~ 6619215 (+)
si:dkey-178o16.4 LOC103355435,LOC104921970,LOC104952562 coding upstream 215513 6537541 ~ 6541431 (+)
trnt1 trnt1 coding upstream 219520 6529451 ~ 6537424 (+)
LOC120556937 LOC103355436 coding upstream 235783 6466816 ~ 6521161 (+)
LOC120556653 naaa coding downstream 6530 6767012 ~ 6770275 (+)
arl8bb arl8b,arl8a,LOC107095653,LOC105934196,LOC106565753,LOC103355426 coding downstream 15244 6775726 ~ 6786267 (+)
sema3fb LOC103371090,LOC104933620 coding downstream 121663 6882145 ~ 6941612 (+)
LOC120557474 traip coding downstream 321783 7082265 ~ 7090752 (+)
gata1a LOC100696076,LOC102798593,LOC101485806,LOC102310803 coding downstream 552252 7312734 ~ 7317082 (+)
LOC120556885 NA non-coding upstream 175641 6578980 ~ 6581303 (+)
G36299 NA non-coding upstream 182597 6574146 ~ 6574347 (+)
G36288 NA non-coding upstream 212870 6543467 ~ 6544074 (+)
G36231 mitfa,mitf-a,LOC100534525 non-coding upstream 323835 6429507 ~ 6433109 (+)
G36201 gpr27,LOC103355443,LOC102784210 non-coding upstream 642631 6111677 ~ 6114313 (+)
G36353 NA non-coding downstream 12254 6772736 ~ 6773170 (+)
G36368 NA non-coding downstream 187597 6948079 ~ 6951049 (+)
G36369 NA non-coding downstream 192970 6953452 ~ 6953907 (+)
G36370 NA non-coding downstream 195051 6955533 ~ 6955855 (+)
G36408 NA non-coding downstream 353967 7114449 ~ 7117220 (+)
setmar LOC100698471 other upstream 118421 6635280 ~ 6638523 (+)
foxp1b foxp1 other upstream 450801 6139463 ~ 6306143 (+)
prok2 prok2,LOC103355444 other upstream 649792 6104613 ~ 6107152 (+)
rybpb rybp other upstream 701728 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 832544 5920924 ~ 5924400 (+)
si:dkey-245f22.3 NA other downstream 422717 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 449514 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 528425 7288907 ~ 7306343 (+)
G36744 NA other downstream 1467280 8227762 ~ 8228720 (+)
prickle2b prickle2 other downstream 2999751 9760233 ~ 9856656 (+)

Expression


Co-expression Network