prok2 (prok2,LOC103355444)


Basic Information

Item Value
gene id prok2
gene name prok2,LOC103355444
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 6104613 ~ 6107152 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU48491
TGCGAAGTCGACTGACACTTTCACCACCTTCCATTGCATCCATTATGcctgatgaaaataaaaaaaaaatgaataccaaaaggtgtctctctttctgcttcCAGGTTCCTTTCAATGGGAAAAGACTCCACCACACTTGCCCCTGCCTGCCCAACCTGTTGTGTATCACCACAGAGGAGGGGAGATCCAAATGTCACCCACCATACAGCTATTCCAATTACTACCTCTGAGACACTTACAGTTACACTGTTTGCCACTAGCACTGTTCTGCCTTTAAAaagcc
>XM_039798603.1
ATGGCGGGCTGGGTTTATAAACCTCCGCCAGATGAACACATGAGTTTGAAGGCCACTtgtctctgctgtctgtcaCGTATGCACATGCAGGAAGGTCTGTCAGCATCAGCATCCTTACTTTTCACCCTGGAGGGCACTGGAGCGCAAAGACAGCTCTTCATCATGAGGTCCTTCTTCCTACTGCTCTTCACCCTGTTGTTGGTGTCCCACGGATCTTCGGCAGTCATCACAGGGgcctgtgAGAAGGACTCTCAGTGTGGAGAAGGCATGTGCTGTGCAGTGAGCTTGTGGATCCGCAGCCTGCGTATGTGCACGCCCACGGGCCAGAAAGGAGACGACTGTCACCCTATGAGCCACAAGGTTCCTTTCAATGGGAAAAGACTCCACCACACTTGCCCCTGCCTGCCCAACCTGTTGTGTATCACCACAGAGGAGGGGAGATCCAAATGTCACCCACCATACAGCTATTCCAATTACTACCTCTGAGACACTTACAGTTACACTGTTTGCCACTAGCACTGTTCTGCCTTTAA

Function

symbol description
prok2 Predicted to enable G protein-coupled receptor binding activity. Acts upstream of or within angiogenesis; response to light stimulus; and sleep. Predicted to be active in extracellular region. Is expressed in brain and trunk. Human ortholog(s) of this gene implicated in hypogonadotropic hypogonadism 4 with or without anosmia. Orthologous to human PROK2 (prokineticin 2).

NR:

description
toxin MIT1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU48491 False 283 lncRNA 0.45 1 6106870 6107152
XM_039798603.1 True 533 mRNA 0.53 4 6104613 6107146

Neighbor

gene id symbol gene type direction distance location
shq1 shq1 coding upstream 90659 5957271 ~ 6013954 (+)
pdzrn3b pdzrn3 coding upstream 199450 5793732 ~ 5905163 (+)
cntn3b cntn3,LOC100696343,LOC102785363 coding upstream 439560 5610010 ~ 5665053 (+)
LOC120556975 LOC103365933,LOC100695288,LOC105934533 coding upstream 1061136 4956351 ~ 5043477 (+)
rpn2 rpn2,LOC102784465 coding upstream 1200923 4893449 ~ 4903690 (+)
LOC120557997 eif4e3,LOC103355441 coding downstream 11480 6118632 ~ 6132639 (+)
eevs LOC104922196,LOC103355445,LOC104966975,LOC105934428 coding downstream 307814 6414966 ~ 6426594 (+)
LOC120556937 LOC103355436 coding downstream 359664 6466816 ~ 6521161 (+)
trnt1 trnt1 coding downstream 422299 6529451 ~ 6537424 (+)
si:dkey-178o16.4 LOC103355435,LOC104921970,LOC104952562 coding downstream 430389 6537541 ~ 6541431 (+)
G36175 NA non-coding upstream 48387 6055244 ~ 6056226 (+)
G36170 NA non-coding upstream 83490 6020853 ~ 6021123 (+)
G36145 NA non-coding upstream 409667 5694393 ~ 5694946 (+)
G36114 NA non-coding upstream 664004 5438157 ~ 5440609 (+)
G36106 NA non-coding upstream 825931 5276453 ~ 5278682 (+)
G36201 gpr27,LOC103355443,LOC102784210 non-coding downstream 4525 6111677 ~ 6114313 (+)
G36231 mitfa,mitf-a,LOC100534525 non-coding downstream 322355 6429507 ~ 6433109 (+)
G36288 NA non-coding downstream 436315 6543467 ~ 6544074 (+)
G36299 NA non-coding downstream 466994 6574146 ~ 6574347 (+)
LOC120556885 NA non-coding downstream 471828 6578980 ~ 6581303 (+)
rybpb rybp other upstream 49397 6035072 ~ 6055216 (+)
G36156 LOC103374102 other upstream 180213 5920924 ~ 5924400 (+)
cdk5rap1 cdk5rap1 other upstream 1170449 4911699 ~ 4934164 (+)
G35921 NA other upstream 1519138 4487535 ~ 4585475 (+)
LOC120557928 NA other upstream 1571751 4529833 ~ 4532862 (+)
foxp1b foxp1 other downstream 32311 6139463 ~ 6306143 (+)
setmar LOC100698471 other downstream 528128 6635280 ~ 6638523 (+)
si:dkey-245f22.3 NA other downstream 1076047 7183199 ~ 7187214 (+)
G36458 LOC100304472,LOC107385856 other downstream 1102844 7209996 ~ 7272368 (+)
hcfc1a hcfc1,LOC102799381,LOC102206223 other downstream 1181755 7288907 ~ 7306343 (+)

Expression


Co-expression Network