RNA id: TU48831


Basic Information

Item Value
RNA id TU48831
length 1846
lncRNA type sense_over
GC content 0.35
exon number 1
gene id si:dkey-245f22.3
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7183199 ~ 7187214 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGCCAACTTATAGGGGcaagaccatagactgtaacagTCTATGGGCAAGACACAAATTCTACCTGTTTATGGTTAACAATGTCAATGTTAGCACTCAAATATGTCATGGTAAGACATGGTTAATATCATGGAGAGTGATTAAGTATGAATGGAAACAGCTGAccatacagtgctgctcatgagtataggaacccatgctaaagttgactaaaaagaggaataaaaaaatcatcttttggaaattgatcttaatgccttaattgaaaaaattaggggaaaaaaaagaaaagagattggcatggggtactttccataaaatcatctctcactgcaaatcaaaccagctattaggctaactgaaataaaacaatgccaatctctaggtatggtgtatgtgatgatgtggggctattttaattccaaaggccaagggaactttatcaggatgcatagtatcctggatcaatgaaataactggcctttaaaaataaaaatctgcctgcctctatgggaatttaacataggggtgtactgacttatgccccctgtattataaggaagaacatttatttatttacaatacattattcattcacaatgAAAATTGaagtccttaaaggttggatttttcctaatttttttaattaaggcattacgATCAATTTcgaaaagataatttttttattcctctttttagtcaacttcagCATGGGTTCTtatactcatgagcagcactgtaggTACTTAACCTTATGGGACTGGGAGCAATGCAAATAGCACTGAGCTATGGAGTAGAGCAGCTTTTAGCTCAAAAACAAAGTACGTACATGTAAGCTCTGAATGACCTGGACACCTTAAAATCACTGTAACCACCAAATGTTTTGATGTTTAAATGGTATGTATATCAATAATTTAGGAGGTTGTGTTggaagtaaaacaaaaacaactacacTTATgccagaacttttttttttaacacacatTCATTAACATAAGGTTGCATTGAGCATCTGACAAATTAAATGCCTTTCTAAACTCTGTGGCTATTTTATTGAATAATAATTGCATTGCAGGTTTCACACAACAAACAGTTATACGTTATCATTACAGACATGAGGCTAGTGGTTGGTTTAAAAGAAGGCCAAAGCCCTCTGAGTTCATACTACAATGTCTAGCAAGAATGCATTATTAGATATATTACTTTTGATcgtcaaagaagaagaagccacAATCTTGGTAGAACATGCTAACCAGTAAAATCACTCAGTGACCGCCAAGGTTAACAGGGACAAACAATCACTGACAACATAGAGATTAGTCAGGAGAAACTACTTCTCAAACTATTATTCAGGTATCAAAAAACTAATGCAATGAACTACAGTACTAtagtaaaaagttaaaattgtTCTGCATTTCTCATACTGCCTTACATTTCCACTGACAGTGTGaatatattcaaaaataaaatgcttaCTTGTAATTTGTAGCTACTCTGGCAGAAGTCCTGCTTTGGCTAactagctgcagcagcaagtGATTTTCCATTGCTTTTAAGGTTCATTACAAATACATGTAACCTGGGCATTAGCTGTCCACTGTGTTCTGTGATagtaataaaaacagacaaaagctCTCATAAAATGCATAGACTAGCCATAAAATAAGGTGCAATAATATtgctcaaaataaaatattcttaTATACAATATGCAGTAAATATTTAACAATGTGCCAATTCCCCTAACAAAGATCCCTTCTGTAGCTGCTGGTGAAACAACCCAACATTGATGAGCATGCGACTGCTATTATTAAACCCTGATTCCAGTcagttaaaaaacacacacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48808 lncRNA upstream 30874 7152803 ~ 7154495 (+) True G36431
TU48803 lncRNA upstream 36678 7147991 ~ 7148691 (+) True G36426
TU48801 lncRNA upstream 38319 7146117 ~ 7147050 (+) True G36424
TU48787 lncRNA upstream 59741 7124942 ~ 7125628 (+) True G36412
TU48786 lncRNA upstream 61850 7123300 ~ 7123519 (+) True G36411
TU48834 lncRNA downstream 4802 7192016 ~ 7192490 (+) True G36450
TU48859 lncRNA downstream 22782 7209996 ~ 7268670 (+) True G36458
TU48862 lncRNA downstream 22782 7209996 ~ 7268670 (+) False G36458
TU48848 lncRNA downstream 28142 7215356 ~ 7258950 (+) False G36458
TU48851 lncRNA downstream 28142 7215356 ~ 7243753 (+) False G36458
XM_039797831.1 mRNA upstream 94617 7082265 ~ 7090752 (+) False LOC120557474
XM_039797830.1 mRNA upstream 96260 7082265 ~ 7089109 (+) True LOC120557474
XM_039798612.1 mRNA upstream 243757 6882146 ~ 6941612 (+) True sema3fb
XM_039797595.1 mRNA downstream 101693 7288907 ~ 7306343 (+) True hcfc1a
XM_039797596.1 mRNA downstream 101693 7288907 ~ 7306343 (+) False hcfc1a
XM_039797600.1 mRNA downstream 125520 7312734 ~ 7317082 (+) True gata1a
XM_039797604.1 mRNA downstream 148252 7335466 ~ 7337312 (+) True mafbb
XM_039797261.1 mRNA downstream 174726 7361940 ~ 7377650 (+) False si:ch211-232b12.5
TU48651 other upstream 546982 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1132600 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1260969 5920924 ~ 5924400 (+) True G36156
XR_005638977.1 other upstream 2251205 4911700 ~ 4934164 (+) True cdk5rap1
TU48863 other downstream 54995 7242209 ~ 7258950 (+) False G36458
TU49260 other downstream 1040548 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1429784 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1454816 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1523795 8711009 ~ 8711080 (+) True trnae-cuc_6

Expression Profile