RNA id: XM_039797596.1


Basic Information

Item Value
RNA id XM_039797596.1
length 8072
RNA type mRNA
GC content 0.50
exon number 28
gene id hcfc1a
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 7288907 ~ 7306343 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTCTTCCATTTTCCTCCGCCTCTGGTTGTCAAGAAGATGGCAGCTTCCAGGCAGGCATGAGAGGGAATACTTCTTCAAAAATCGAATGAATTTGGATTATTGCCGCAAGATACGACCACATACCAGTGTTTTTGCAATTACTGCATCGAAATAAAAATCATGTCTGCCCCTGGCTCCGCGGTGTCTGGGACCATGGCGTCGGTTCTGCAGCCGCGGTGGAAACGGGTCCTGGGATGGTCCGGTCCCGTTCCCCGGCCCAGGCatggacacagagctgtagctaTAAAGGAGCTTATGGTTGTCTTTGGCGGTGGAAACGAAGGGATTGTGGACGAATTacatgtatacaacactgCAACAAACCAGTGGTTTATCCCAGCGGTCCGTGGTGATATTCCCCCTGGTTGTGCTGCATATGGTTTTGTCTGTGATGGCACAAGATTGCTGGTATTCGGTGGCATGGTGGAGTATGGAAAGTACAGCAACGATCTCTATGAACTACAGgCCAGCAGATGGGAATGGAAAAAGTTGAAAGCAAAAAACCCGAAGAATGGCCCCCCTCCTTGTCCTCGTCTTGGCCACAGTTTTTCCCTGGTTGGCAACAAATGCTATCTGTTTGGTGGACTAGCCAATGACAGCGAGGACCCAAAAAACAACATTCCCAGATACCTAAATGATCTGTACACACTTGAGCTTCGTGCGGGTTCCAGTGTGGTTGGATGGGATATTCCAATCACATATGGAGTTCTGCCTCCTCCCCGTGAGAGTCACACTGCTGTGGTGTATACAGAAAAGACGAGCAGGAAATCTCGCCTCATAATCTATGGAGGGATGAGTGGTTGCCGCCTTGGAGATCTGTGGACACTTGATATTGATACCCTGACATGGAACAAACCATCAGTAAGCGGGACAGCACCGCTCCCCAGAAGTCTGCACTCTGCCACTACCATCACAAACAAGATGTATGTTTTTGGAGGATGGGTTCCATTGGTAATGGATGATGTCAAAGTGGCCACACACGAGAAGGAGTGGAAGTGCACAAACACTCTTGCCTGCCTAAATCTAGacTCCATGTGTTGGGAGACAGTATTGATGGATACTCTTGAAGACAACATCCCTAGGGCCCGTGCTGGCCACTGTGCTGTAGCCATCAATTCCAGACTCTATGTTTGGAGCGGCCGTGACGGTTATCGTAAAGCTTGGAACAACCAAGTCTGTTGTAAAGACCTCTGGTACCTCGAAACAGagcgTCCACACGCCCCTGCAAGGGTGCAGTTAGTCCGTGCCAACACAAACTCTCTTGAGGTGAGCTGGGGCGCTGTCTCAACTGCTGACACCTACTTACTACAGCTGCAGAAATATGACATCCCTGCAACTCCTGCCTCACCAGCCATGAGTGCCACCCCCGTGCAGCCTGTGAACTCTCCAAAGAGCCCCTCACCGGCTGTTGCAGCCCTCTCTGCTCAGAGCCTACCCCAGACAGCGGTCTTGAAGGTTGCAGCTCAACAGTCTGCCACAGGCACATCTGTTGTCACAGTCCGCCCCAGCCAGCCTGGGAAATCCCCTGTCACTGTGACATCCCTTCCACCAGGTGTCCGAATGGTAGTGCCTGCCCAGACCACCCAAGGATCGccAATTGGGAGCAGCCCTCAGATGAGTGGCATGGCAGctttagctgcagcagctgcagcaacaCAGAAGATCCCGCCCTCTGCAGGCACTGTCCTCAATGTTCCTGCAGGTGCCACCATTCTCAAAACAGTAGCCGTTTCGCCTGGCACAACCACAATGAAAATGGCTTCTCCAGTCATGGTCAGTAACCCGGCCACCCGgatgctgaaaacagctgcagcCCAGGTGGGCACAGCAACTGCATCCTCCCCCACCAACACCAGACCCATCATCACTGTGCACAAGTCTGGTGCAGTCACAGTGGCCCAGCAGGCCCAAGTGGTAACCACTGTGGTAGGAGGAGTCACCAAGACCATTACCCTGGTCAAGAGTCCTCTCACCATGGGCAGCAGTGGCACTCTGATCTCCAACCTTGGCAAGATGATGTCTGTGGTACAAACCAAGCCAGTGCAGACATCAGCTATCACAGGCCAGGCTTCCACTAACCCTCTCACACAGATCATACAGACAAAGGGTCCCCTCCCAGCTGGCACCATCCTGAAACTAGTGACCTCCGCAGATGGCAAGCCCACAACCATCATCACCACTTCCCAGGCAGGAGGCACAGGAAACAAGCCCACTATACTGAACATCAGCGGTGTCTCTCCCTCCACCACTAAGCAGGGCACCACCATAATTAAGACCATCCCCATGTCGGCCATCATGACCCAGCCTGGAGCCACAGGTGTGACAAGCAGTGCAGGCATGAAAACGCCTATCACAATCCTTACCACAAAGGTGATGACCACTGGAACTCCTGGTAAAATCATCACTGCAGTGcccaaacttggcactgcagcTGGCCAACAGGGACTGACACAGGTGGTTTTGAAGGGCGCTCCTGGGCAACCTGGCACTATTTTGCGCACTGTGCCTATGAGCACGGTTGGCGGTGTTCGACTTGTTACACCAGTGACAGTGTCTGCTGTTAAGCCCACTGTTACCACTCTGGTTGTCAAGGGGACTACTGGTGTTACCACTCTTGGGACTGTCACTGGTACAGTCTCCTCAAGCCTGGCAGGAGGCACGGTGGACAGTTCCAACGCCTCTCTGGTCACCCCCATCACCACATTGGGAACCATCGCTACACTGTCCAGCCAGGTCATTAGCCCATCTGCCATAACTGTGTCAACTGCTCAAACCAGCCTGACTTCTGCCTCCACGTTGCCCTCCTCTACCATGACAGTGCAGAACCAGCCCACCCAGGTTACTCTGATCACAACTCCCAGTGGTGTAGAAGCTCAACCAGTGCAGGATTTGCCAGTGTCCATCCTGGCTTCACCAACCTCTGAGCAGCCCAGCTCCACTGAggctggatcagctggagagggCTCTGGGACCGTCACCCTGGTCTGTTCTAACCCGCCCTGTGAGACCCACGAGACAGGAACCACCAACACGGCCACCACCTCCTCTGCCACCATTGGAGCAGGACAGGTCTGTTCTAACCCGCCCTGCGAGACCCACGAGACAGGAACCACCAACACGGCCACCACCTCCTCTGCTGCAATTGGAGTAGGACAGGTGTGCTCCAACCCGCCATGTGAAACGCATGAAACGGGGACAACCAACACAGCCACAACTGCATCATCAAACATGTCTGCACCGCGCATGTGCTCCAACCCACCATGCGAGACCCATGAAACTGGGACAACTAACACAGCTACCACAGCATCGGCTAACATGGGAAGCGACCAGGCCAGCACAGCGACAGACCAGGTCAAGACAGTTTGCTCCAACCCACCGTATGAGACCCACAAGACAGGGGCCACCAACGCAGCCACCCAGTCGTCATCTAACATGAATGCAGGCCAGACGAGCACCGTGCAGAAGTTGTGCTCCAACCCACCCTGCGAAACACACGAGACCGGGACCACCAACACCCAGTCCACAGCCTCCTCCAGCATGGGAAGCGAACAGACCAGCACAGCTTCAGGCCAGGTCCAGACGGTTTGCTCCAACCCACCCTGTGAAACACACGAGACAGGGACCACCAACACCCAGTCCACATCCTCCTCCAGCATGGGAAGCGAACAGACCAGCACAGCTTCAGGCCAGGTGCAGACTGTTTGCTCCAACCCACCCTGTGAAACACACGAAACTGGGACCACCAACACCCAGTCCACATCCTCCTCCAGCATGGGAAGCGAACAGACCAGCACAGCTTCAGGCCAGGTGCAGACTGTTTGCTCCAACCCACCCTGTGAAACACACGAAACTGGGACCACCAACACCCAGTCCACAGCCACCTCCAGCATGGGAACCGACCAGACCAGCACAGCAACAGGCCAGGTCCAGACGGTTTGCTCCAACCCACCCTGTGAAACACACGAAACTGGGACCACCAACACAGCCACCACTGCCACCTGCAGCATGGAGACAGGCGAAGGCACAGCCCAGCAGACAGAAGAGGGAGCAGAAGGTACCAGCAGCACAGAAGTGGCCTCTACTGCAGCAACGGGCATAGTTACCACCCCCCAGGGCAGGGCCATCACTACGGTCACTCAGTCTACACCAGCCCCTGGACCATCTGTACCTTCGATCTCATCAATCACAGAGGGTGTGAGTCCCAGCTCCACAGAGGAACCTATGCAAACTGATGAGACGGCATCAGCAgaagctgcacctgcagtggAGGGAGCCACCGCTATGCAGACACAAGTGGAGGGAGAAGCCGCCACATCTACAGCCTTGAATCTTCCCTCAGAGCTGATGTCTGAGGGTCAGGGCGCCACACTCATGGTGACAGGGCTGTCGGATGAGGAGCTGGCTGTGACTGCAGCGGCAGAAGCCGCTGCTCAGGCAGCAGCCACGGAAGAAGCCCAGGCCCTCGCTATCCAGGCTGTCCTCCAGGCAGCCCAGCAAGCCGTAATGCATGAGGGCAATTCCACTGGAGAGAGCCAGCAACCCACCAACATCCCCATCATGTTGACCCAGCAGGAGCTTGCAGCACTGgtccaacagcagcagcagctgcaggaggCTCAGGCTGCTGCACAGCAGGCTGCCATGGACACAAGCTTGCCTACTGAAGGCCTCGCCCCTGCTGACAGCCTCAACGACCCCTCTGTCGAGAGCAACGGACACAATGAGATGGCTGCCGCTGTCACCAGTGCTGTGGCGTCACTGCTGCCACGTACTACTGCTGAGACACTCGCTCCATCAAGCACATTTGCACCCTCTGTTTCGGTGGCAAGTCCAGCCAAGCTGCAAGCAGCCGCTGCTCTAGCAGAGGTCGCCAATGGGATCGAGGGAGagAAGCAAGCCCCTCAGCCAACTCCAGTGAAGCCTGTTGTAAAAAAAGAGAATCAGTGGTTTGATGTTGGAATTGTTAAAGTGACAAATATGGTTGTCACCCACTTCTATATGCCAGGAGATGATTCTCACGGAGATGATGACTCTGGCATCATGCCAGACTACGGCCAGATGAAGAAAATGGAGCTGCAGCCTGGAACAGCTTACAAGTTCCGTGTTGCTGGAATCAACGCTTGTGGTCGTGGATCTTTCTCAGAGATATCTGCTTTCAAGACTTGCCTGCCAGGCTTCCCAGGGGCACCTTGCGCCATCAAAATCAGCAAGAGCCCAGATGGTGCCCACCTGACCTGGGAGCCACCCTCGGTGACGTCGGGGAAGATCATCGAGTACTCTGTTTACTTGGCCATCCAGAGCAACCAGACAGCTGAAGCCAAGGCCTCCACCCCAGCACAGCTAGCCTTCATGCGCGTGTACTGTGGACCCAACCCCTCTTGCTTGGTGCAGTCGTCCAGCCTCTCCAACGCCCACATCGACTACACCACCAAGCCAGCCATCATCTTCCGCATCGCCGCCCGAAATGAGAAGGGCTACGGTCCCGCCACCCAAGTTCGATGGCTGCAAGAATCTGGCAAAGATGCCGCCTCTGCAAAACCAGCCCCCAAAAGACCAGGCACCTCTCCTGATACTAAGGCTACTGGTCCAAAGAAAGCAAGAACGGACCAGTGAGGTTGCCCAGAGACCCCTCCCAGTCTTTTGTCCTTTTTCCACTCGCTGTCCTTTTATCAGGAAGACTGACCTTCAcccctcctcatcatcatcctAATCTCATCCTCCATTCTCAAGTCTCAGAGCAAGACAGCAATGGAGGCAGAACAACCGTATGAAGCCGAGATGAAAGTCAATCTGAGAGATTTTTCTGTAGATAAAAACCCTCCTTCCTCCTCGTTCTGTTGGTTGTACTATTTTTAGAGCAACGCAAACTTAGAAGCACATTATCTTTTTCAGTCACATCCCTTTTCATCGTTTAACATCTATTTTTGGCTTGTTTCAGTAGTTGAGCAGTATAGAGAAGCATTTACATCTTTCACAAACTGGGAGCCTGAGCGCAatgttaccttttttttcttcttttgtgaaTCCTGGGGGGGATGTAGAGAGAGACTACACAAAATGATGTACAGTGTTGAAAAAAGCTGGGGAGACATTAGTTTAGATGAGAGGAAAAATCGGTATGGATACAAATAAAGCACTTGTCCTCAATGACAGAGGacatcattttttctttttctttttttttttttgctcataaACAAATTTTCTTCATCGAGAACGGAGTCTGTATTAATCATACAGGACTCAAGTCTCCTGGTAATGTCATTACTGTGCGCTTTTTACCCCAAGATGAGGACTGGTGGCCGACACTTCAAAGTGGACAAAAAAGAATGACGAAGAGATTTGTAGAGAATGAATGACAGACTTTGCTAGGACTGAGACTTgcagcacacacaaaaatctTGCAAAATCTTCCCAAAAAAATAGCAAGCAATGATGCAGAAGATCTTTTGTgtagtttatttttgtattttttaagctttttttttttttttttcctcctgtgtgtatgtgtatgttgtgtgcatttttaaaaacatcactttttttaaccgttgttcatccCCATAGTTTGTGTTTGTGGGAAGATTGGTGGCTATGTTGAAGTTGCcactatattttttaaaaatcttCATTCAGTTGGTTGTATGTTCTTGCTGTTAACAGATGACAATGAGAGAGACTTGTATTTGTTCCAAGTAGACCACACAGGTTATTGAGACTGAAGGAAACTTTTAAGTGgacccagagagaggagagtTTTACTTTGTTTACTACCCTATGCTTGTGTTGCTTTGCTTGCCAAACATGAATTTCATGGGCTATAAGGAAAATAACATCAGATCTTTTCATACGTTTCCCCTAATATCCCAATCAGATATCCTGCTCTTTTTATGCTCATGAATGTGCTGTCTCACCTCTTCTTTAATTTTTAGAATGGCAAATTATATAAGTAGACATATTTTCCCTATCCTATTGATGTATGTGAATCCATTTaataaattttaatttttttccttcCATGGCTCTGTATTTCAGACTACAGATGGTGTGCAAGCTAACTGTGACGTGTAAACCCGTATGTCTTTTGAATGGGGATGCCTTGGGACGAAAGCTTACATAGCCAGAGTGTACTCACTTGTAAATTAGTTCGTTCATAGAGTAAgaataaatcaaacaaacaaaacatcttGGCCTTTTATATAATTACCTGTAACAAACGGTTTTTACATGTCGGTCATCTCTTAATTGCCTTTTGTGTCTTtacttaaaaataaacaaatatatatatatatatataaatatatatatagtgtccCTTATGGTTCTAATTTGCTTCTGTCAAGCTGATTCACTGTAGGAGTCCGAGTCACTGCTAGGTTTATTACAATACAAGATTTTTGTACAGGGAGGAGGTTTCTCACCAGACATGAGTGTATATCTACTTTGTAAGGGCGGATTCAGTTGTGATGTTAACGGCCAGGAAGATCAGAGCCAAGGTTTTCGCTTGCTGCCTTTTCTCCAGCTGGCACCTTGGTTTCTGTTTGTGGTTTCTCCCAATTTCTTTCTAAAAATGAAGTTTCTCTTCATATGCATTCataatttttgtgtgtgtcagtgtgtctgttGAACAAAACTAGACATGCATGCAAAAGCCGTGTATTTTAGTAGTGATGCCTTAAGTTAGACCATAAGCTGAAGGTtctcaaaaaaagaagaaaaaaaaaacatttaatgagTTTGTTCCTCTCTCCACGTGGTATACAATTGTGTCCTTTCCTTCCACAGTACCTTTGCTGGGTCACTATTTTGCACCCTCGTTAGATAGGTCATCATCAGCAGTGCCGAGGTCTCTCTGAACTTTTCCTCCCACACTGGGACGAGTGCTGCTCTCAGCACTCACAGGTGTTGCGAGTTTCTCTCGGCTGTTCGCAGGTTATCTGGAAATGTCCTGTATTTTccaatgtgtgttttttgtactGTAGGGAGTAATGTATCTTTTATCatcaaaaaataaacatgttaaacataaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU48885 lncRNA upstream 15028 7273081 ~ 7273879 (+) True G36470
TU48884 lncRNA upstream 16107 7272454 ~ 7272800 (+) True G36469
TU48865 lncRNA upstream 16539 7243862 ~ 7272368 (+) False G36458
XR_005638960.1 lncRNA downstream 22952 7329295 ~ 7330628 (+) True LOC120557355
TU48909 lncRNA downstream 51408 7357751 ~ 7359732 (+) True G36485
TU48980 lncRNA downstream 72352 7378695 ~ 7454262 (+) True G36529
TU49021 lncRNA downstream 169791 7476134 ~ 7479379 (+) False G36563
TU49022 lncRNA downstream 169791 7476134 ~ 7478252 (+) True G36563
XM_039797955.1 mRNA upstream 103268 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797957.1 mRNA upstream 103268 7183199 ~ 7185639 (+) False si:dkey-245f22.3
XM_039797831.1 mRNA upstream 198155 7082265 ~ 7090752 (+) False LOC120557474
XM_039797830.1 mRNA upstream 199798 7082265 ~ 7089109 (+) True LOC120557474
XM_039798616.1 mRNA upstream 347295 6905953 ~ 6941612 (+) False sema3fb
XM_039797600.1 mRNA downstream 6391 7312734 ~ 7317082 (+) True gata1a
XM_039797604.1 mRNA downstream 29123 7335466 ~ 7337312 (+) True mafbb
XM_039797261.1 mRNA downstream 55597 7361940 ~ 7377650 (+) False si:ch211-232b12.5
XM_039797260.1 mRNA downstream 57852 7364195 ~ 7377650 (+) False si:ch211-232b12.5
XM_039797259.1 mRNA downstream 57882 7364225 ~ 7377650 (+) True si:ch211-232b12.5
TU48863 other upstream 29957 7242209 ~ 7258950 (+) False G36458
TU48651 other upstream 650520 6635302 ~ 6638387 (+) False setmar
TU48489 other upstream 1236138 6035100 ~ 6052769 (+) False rybpb
TU48469 other upstream 1364507 5920924 ~ 5924400 (+) True G36156
XR_005638978.1 other upstream 2354743 4911700 ~ 4934164 (+) False cdk5rap1
TU49260 other downstream 921419 8227762 ~ 8228720 (+) True G36744
unassigned_transcript_183 other downstream 1310655 8616998 ~ 8617069 (+) True trnae-cuc_4
unassigned_transcript_186 other downstream 1335687 8642030 ~ 8642101 (+) True trnae-cuc_5
unassigned_transcript_189 other downstream 1404666 8711009 ~ 8711080 (+) True trnae-cuc_6
unassigned_transcript_190 other downstream 1432624 8738967 ~ 8739038 (+) True trnae-cuc_7

Expression Profile